Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003847A_C01 KMC003847A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC41907.1| unknown protein [Arabidopsis thaliana] gi|289508... 44 0.001
ref|NP_178347.1| unknown protein; protein id: At2g02420.1 [Arabi... 44 0.001
ref|NP_013726.1| catalyzes the CTP-mediated phosphorylation of d... 33 1.7
gb|AAF77239.1| NADH dehydrogenase subunit 2 [Drosophila melanoga... 32 6.4
emb|CAB91051.1| NADH dehydrogenase subunit 2 [Drosophila melanog... 32 6.4
>dbj|BAC41907.1| unknown protein [Arabidopsis thaliana] gi|28950879|gb|AAO63363.1|
At2g02410 [Arabidopsis thaliana]
Length = 308
Score = 44.3 bits (103), Expect = 0.001
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -1
Query: 539 KHNLDAEVVDALKDLRXKLSEKELK 465
KHNLD+EVVDALKDLR KLSE E K
Sbjct: 283 KHNLDSEVVDALKDLRDKLSENETK 307
>ref|NP_178347.1| unknown protein; protein id: At2g02420.1 [Arabidopsis thaliana]
gi|25410984|pir||E84436 hypothetical protein At2g02420
[imported] - Arabidopsis thaliana
gi|3894174|gb|AAC78524.1| unknown protein [Arabidopsis
thaliana]
Length = 48
Score = 44.3 bits (103), Expect = 0.001
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -1
Query: 539 KHNLDAEVVDALKDLRXKLSEKELK 465
KHNLD+EVVDALKDLR KLSE E K
Sbjct: 23 KHNLDSEVVDALKDLRDKLSENETK 47
>ref|NP_013726.1| catalyzes the CTP-mediated phosphorylation of dolichol, the
terminal step in dolichyl monophosphate (Dol-P)
biosynthesis. required for viability, normal rates of
lipid intermediate synthesis, protein N-glycosylation.;
Sec59p [Saccharomyces cerevisiae]
gi|134286|sp|P20048|SC59_YEAST Dolichol kinase
gi|83526|pir||JQ0124 membrane protein SEC59 - yeast
(Saccharomyces cerevisiae) gi|172568|gb|AAA35033.1|
SEC59 gi|728662|emb|CAA88530.1| Sec59p [Saccharomyces
cerevisiae]
Length = 519
Score = 33.5 bits (75), Expect = 1.7
Identities = 23/64 (35%), Positives = 34/64 (52%), Gaps = 5/64 (7%)
Frame = -2
Query: 178 SLKQIFFSLFI-CIMCFSLNFT----HGGHSSKHNFRSYTLYLLIICNAIMGLSTTK*NT 14
S KQIF ++F+ C++ L FT HG S Y+LYL + + + S+T NT
Sbjct: 83 SYKQIFVNVFVVCLIMVGLIFTKYWQHGYKSLPKFDTIYSLYLPFMVSLLFDTSSTVINT 142
Query: 13 FLVL 2
L+L
Sbjct: 143 ILIL 146
>gb|AAF77239.1| NADH dehydrogenase subunit 2 [Drosophila melanogaster]
Length = 341
Score = 31.6 bits (70), Expect = 6.4
Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 2/67 (2%)
Frame = -2
Query: 229 QVVICFHLYKGRKPVCQSLKQIFFSLFICIMCFSLNFTHGGHSSKHNFRS--YTLYLLII 56
Q+ +C + + +L +FF L IC F +N+ K N S Y +Y+++
Sbjct: 265 QLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFMMNYFENNWIMKMNMNSINYNMYMIMT 324
Query: 55 CNAIMGL 35
+I GL
Sbjct: 325 FFSIFGL 331
>emb|CAB91051.1| NADH dehydrogenase subunit 2 [Drosophila melanogaster]
Length = 341
Score = 31.6 bits (70), Expect = 6.4
Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 2/67 (2%)
Frame = -2
Query: 229 QVVICFHLYKGRKPVCQSLKQIFFSLFICIMCFSLNFTHGGHSSKHNFRS--YTLYLLII 56
Q+ +C + + +L +FF L IC F +N+ K N S Y +Y+++
Sbjct: 265 QLTLCNQYFMLTLMMMSTLITLFFYLRICYSAFMMNYFENNWIMKMNMNSINYNMYMIMT 324
Query: 55 CNAIMGL 35
+I GL
Sbjct: 325 FFSIFGL 331
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,992,616
Number of Sequences: 1393205
Number of extensions: 8937400
Number of successful extensions: 20127
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20123
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
