Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003842A_C01 KMC003842A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04790 hypothetical protein F10M23.10 - Arabidopsis thalian... 50 1e-05
ref|NP_567754.1| putative protein; protein id: At4g26670.1, supp... 50 1e-05
ref|NP_200362.1| putative protein; protein id: At5g55510.1 [Arab... 49 3e-05
dbj|BAB08568.1| contains similarity to unknown protein~gene_id:M... 49 3e-05
ref|NP_500072.1| Putative nuclear protein, nematode specific [Ca... 32 0.90
>pir||T04790 hypothetical protein F10M23.10 - Arabidopsis thaliana
gi|4455190|emb|CAB36513.1| putative protein [Arabidopsis
thaliana] gi|7269519|emb|CAB79522.1| putative protein
[Arabidopsis thaliana]
Length = 208
Score = 50.1 bits (118), Expect = 1e-05
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = -3
Query: 506 EGLNKQQPALALPMSWK--TTALHNARPPFALPLQLPLPDEMKEAFSSFCKSLKKRNK 339
EGLNK+Q ALA +S + T + L L LP+P+E+K AFSSFCKSL K K
Sbjct: 150 EGLNKRQTALAHSVSLRHQTGLFQDHHRALPLSLALPIPEEIKGAFSSFCKSLAKPRK 207
>ref|NP_567754.1| putative protein; protein id: At4g26670.1, supported by cDNA:
5367., supported by cDNA: gi_15294263, supported by
cDNA: gi_20857096 [Arabidopsis thaliana]
gi|15294264|gb|AAK95309.1|AF410323_1 AT4g26670/F10M23_10
[Arabidopsis thaliana] gi|20857097|gb|AAM26699.1|
AT4g26670/F10M23_10 [Arabidopsis thaliana]
gi|21593873|gb|AAM65840.1| unknown [Arabidopsis
thaliana]
Length = 210
Score = 50.1 bits (118), Expect = 1e-05
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = -3
Query: 506 EGLNKQQPALALPMSWK--TTALHNARPPFALPLQLPLPDEMKEAFSSFCKSLKKRNK 339
EGLNK+Q ALA +S + T + L L LP+P+E+K AFSSFCKSL K K
Sbjct: 152 EGLNKRQTALAHSVSLRHQTGLFQDHHRALPLSLALPIPEEIKGAFSSFCKSLAKPRK 209
>ref|NP_200362.1| putative protein; protein id: At5g55510.1 [Arabidopsis thaliana]
Length = 214
Score = 49.3 bits (116), Expect = 3e-05
Identities = 28/60 (46%), Positives = 35/60 (57%)
Frame = -3
Query: 506 EGLNKQQPALALPMSWKTTALHNARPPFALPLQLPLPDEMKEAFSSFCKSLKKRNKGAFP 327
EGLNK+Q ALA +S++ L L +P+ DE+K AFSSFC SL K K FP
Sbjct: 152 EGLNKRQTALAHSVSFRQQTRSPQHDLPLLSLAIPIHDEIKGAFSSFCNSLTKPKKLKFP 211
>dbj|BAB08568.1| contains similarity to unknown protein~gene_id:MTE17.23~pir||T04790
[Arabidopsis thaliana]
Length = 212
Score = 49.3 bits (116), Expect = 3e-05
Identities = 28/60 (46%), Positives = 35/60 (57%)
Frame = -3
Query: 506 EGLNKQQPALALPMSWKTTALHNARPPFALPLQLPLPDEMKEAFSSFCKSLKKRNKGAFP 327
EGLNK+Q ALA +S++ L L +P+ DE+K AFSSFC SL K K FP
Sbjct: 150 EGLNKRQTALAHSVSFRQQTRSPQHDLPLLSLAIPIHDEIKGAFSSFCNSLTKPKKLKFP 209
>ref|NP_500072.1| Putative nuclear protein, nematode specific [Caenorhabditis
elegans] gi|25375310|pir||A88638 protein F58F6.3
[imported] - Caenorhabditis elegans
gi|2662598|gb|AAB88357.1| Hypothetical protein F58F6.3
[Caenorhabditis elegans]
Length = 170
Score = 32.3 bits (72), Expect(2) = 0.90
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Frame = +1
Query: 340 LLRFFKDLQKEEKA-------SFISSGSGSCRGSAKGGRALCSA 450
L+R +K L KEEK+ SF+S+ S G AK RA+C A
Sbjct: 67 LIRIWKKLPKEEKSKKKKKKLSFLSALSAGGEGGAKNNRAVCLA 110
Score = 20.8 bits (42), Expect(2) = 0.90
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 297 PRYPDYLLGCRKS 335
PR YLLG RKS
Sbjct: 40 PRQHPYLLGTRKS 52
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,996,619
Number of Sequences: 1393205
Number of extensions: 9029906
Number of successful extensions: 27904
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 27002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27878
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
