Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003841A_C01 KMC003841A_c01
(698 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF75749.1|AF261139_1 dehydration-induced protein ERD15 [Lyco... 83 3e-15
ref|NP_181674.1| ERD15 protein; protein id: At2g41430.1, support... 72 7e-12
gb|AAM64638.1| ERD15 protein [Arabidopsis thaliana] 69 8e-11
ref|NP_567425.1| Expressed protein; protein id: At4g14270.1, sup... 50 2e-05
dbj|BAC16068.1| P0496C02.30 [Oryza sativa (japonica cultivar-gro... 47 3e-04
>gb|AAF75749.1|AF261139_1 dehydration-induced protein ERD15 [Lycopersicon esculentum]
Length = 156
Score = 83.2 bits (204), Expect = 3e-15
Identities = 39/73 (53%), Positives = 51/73 (69%)
Frame = -2
Query: 697 FSPEWWQLVTTLTWYHDFWLSQQHDDGAFYGNNVVGEDDVLDLLPDSFDLDAGEDLSVME 518
FSPEWW LVTT TW+HD+W+SQ + G YG +DV DLLP++ DL+ ED+ ME
Sbjct: 29 FSPEWWNLVTTSTWFHDYWMSQ--NQGEEYG----AGNDVADLLPENIDLNVDEDILNME 82
Query: 517 AQLEEFIRSCETQ 479
AQ EEF++S E +
Sbjct: 83 AQFEEFLQSSENE 95
>ref|NP_181674.1| ERD15 protein; protein id: At2g41430.1, supported by cDNA: 31388.,
supported by cDNA: gi_13926319, supported by cDNA:
gi_15912242, supported by cDNA: gi_17473678, supported
by cDNA: gi_20148614, supported by cDNA: gi_710625
[Arabidopsis thaliana] gi|7452401|pir||T02438
dehydration-induced protein (ERD15) [imported] -
Arabidopsis thaliana gi|710626|dbj|BAA06384.1| ERD15
protein [Arabidopsis thaliana] gi|3241941|gb|AAC23728.1|
ERD15 protein [Arabidopsis thaliana]
gi|13926320|gb|AAK49625.1|AF372909_1 F13H10.2/F13H10.2
[Arabidopsis thaliana] gi|15912243|gb|AAL08255.1|
At2g41429/F13H10.2 [Arabidopsis thaliana]
gi|17473679|gb|AAL38296.1| dehydration-induced protein
(ERD15) [Arabidopsis thaliana]
gi|20148615|gb|AAM10198.1| dehydration-induced protein
(ERD15) [Arabidopsis thaliana]
gi|20197424|gb|AAM15070.1| ERD15 protein [Arabidopsis
thaliana] gi|27363320|gb|AAO11579.1| At2g41430/F13H10.2
[Arabidopsis thaliana]
Length = 163
Score = 72.0 bits (175), Expect = 7e-12
Identities = 36/60 (60%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Frame = -2
Query: 697 FSPEWWQLVTTLTWYHDFWLSQQHDDG-AFYGN----NVVGEDDVLDLLPDSFDLDAGED 533
FSPEWWQLVTT TWY D+W+SQQ FY N N G DV DLLP+SFD D ED
Sbjct: 29 FSPEWWQLVTTSTWYPDYWISQQQQGADGFYDNGENENGGGHIDVADLLPESFDFDDMED 88
>gb|AAM64638.1| ERD15 protein [Arabidopsis thaliana]
Length = 163
Score = 68.6 bits (166), Expect = 8e-11
Identities = 35/60 (58%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Frame = -2
Query: 697 FSPEWWQLVTTLTWYHDFWLSQQHDDG-AFYGN----NVVGEDDVLDLLPDSFDLDAGED 533
FSPEWWQLVTT TWY D+W+SQQ FY N N G DV DLLP+SF D ED
Sbjct: 29 FSPEWWQLVTTSTWYPDYWISQQQQGADGFYDNGENENGGGHIDVADLLPESFYFDDMED 88
>ref|NP_567425.1| Expressed protein; protein id: At4g14270.1, supported by cDNA:
30129., supported by cDNA: gi_15028002, supported by
cDNA: gi_20259214 [Arabidopsis thaliana]
gi|15028003|gb|AAK76532.1| unknown protein [Arabidopsis
thaliana] gi|20259215|gb|AAM14323.1| unknown protein
[Arabidopsis thaliana] gi|26452861|dbj|BAC43509.1|
unknown protein [Arabidopsis thaliana]
Length = 143
Score = 50.4 bits (119), Expect = 2e-05
Identities = 27/71 (38%), Positives = 34/71 (47%)
Frame = -2
Query: 697 FSPEWWQLVTTLTWYHDFWLSQQHDDGAFYGNNVVGEDDVLDLLPDSFDLDAGEDLSVME 518
FSP+WW LVTT W+ DFWLS + + F G G+D SVME
Sbjct: 30 FSPKWWDLVTTSKWFRDFWLS-ANSENEFLG---------------------GDDFSVME 67
Query: 517 AQLEEFIRSCE 485
+ EE I S +
Sbjct: 68 EEFEEMIASSD 78
>dbj|BAC16068.1| P0496C02.30 [Oryza sativa (japonica cultivar-group)]
gi|24414178|dbj|BAC22420.1| contains ESTs
C96778(C10671),D22278(C10671)~unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 149
Score = 46.6 bits (109), Expect = 3e-04
Identities = 25/55 (45%), Positives = 33/55 (59%), Gaps = 5/55 (9%)
Frame = -2
Query: 697 FSPEWWQLVTTLTWYHDFWL--SQQHDDGAFYGNN--VVGEDDVLDLLP-DSFDL 548
FSPEWW+LV T W+ D W Q ++D A ++ V +DD+ LLP DS DL
Sbjct: 22 FSPEWWELVKTTAWFRDHWFRQHQMYEDAAAEEDHHRQVFDDDLAALLPDDSLDL 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,804,471
Number of Sequences: 1393205
Number of extensions: 12445031
Number of successful extensions: 54241
Number of sequences better than 10.0: 163
Number of HSP's better than 10.0 without gapping: 39249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49062
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
