Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003838A_C01 KMC003838A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565206.1| expressed protein; protein id: At1g79380.1, sup... 79 5e-14
ref|NP_201202.2| putative protein; protein id: At5g63970.1, supp... 66 2e-10
dbj|BAB63607.1| P0483G10.1 [Oryza sativa (japonica cultivar-grou... 65 4e-10
ref|NP_196946.1| putative protein; protein id: At5g14420.1, supp... 60 1e-08
ref|NP_186814.1| unknown protein; protein id: At3g01650.1 [Arabi... 60 1e-08
>ref|NP_565206.1| expressed protein; protein id: At1g79380.1, supported by cDNA:
gi_13937148 [Arabidopsis thaliana]
gi|25406578|pir||G96824 hypothetical protein T8K14.20
[imported] - Arabidopsis thaliana
gi|4835771|gb|AAD30238.1|AC007202_20 Similar to
gi|3844599 F31D5.2 gene product from Caenorhabditis
elegans cosmid gb|U28941 and contains PF|00097 Zinc
(Ring) finger C3HC4 domain. ESTs gb|F19963 and
gb|T42582 come from this gene. [Arabidopsis thaliana]
gi|13937149|gb|AAK50068.1|AF372928_1 At1g79380/T8K14_20
[Arabidopsis thaliana] gi|22137140|gb|AAM91415.1|
At1g79380/T8K14_20 [Arabidopsis thaliana]
Length = 401
Score = 78.6 bits (192), Expect = 5e-14
Identities = 33/56 (58%), Positives = 41/56 (72%)
Frame = -1
Query: 516 ASMEDERNQMECAICLTNGKDLAFGCGHMSCRDCGSRLSNCHICRERITSRLRVFT 349
AS C ICLTN KD+AF CGHM+C DCGS++SNC ICR RIT+RL+++T
Sbjct: 346 ASPASPEQTQSCPICLTNRKDVAFSCGHMTCGDCGSKISNCPICRVRITNRLKLYT 401
>ref|NP_201202.2| putative protein; protein id: At5g63970.1, supported by cDNA:
gi_20259325 [Arabidopsis thaliana]
gi|20259326|gb|AAM13989.1| unknown protein [Arabidopsis
thaliana] gi|21689819|gb|AAM67553.1| unknown protein
[Arabidopsis thaliana]
Length = 367
Score = 66.2 bits (160), Expect = 2e-10
Identities = 24/45 (53%), Positives = 36/45 (79%)
Frame = -1
Query: 483 CAICLTNGKDLAFGCGHMSCRDCGSRLSNCHICRERITSRLRVFT 349
C ICLTN KD+AF CGH +C++CG ++ C +CR+ IT+R+R++T
Sbjct: 323 CPICLTNPKDMAFSCGHTTCKECGVVITTCPLCRQPITTRIRLYT 367
>dbj|BAB63607.1| P0483G10.1 [Oryza sativa (japonica cultivar-group)]
gi|20146233|dbj|BAB89015.1| P0401G10.23 [Oryza sativa
(japonica cultivar-group)]
Length = 402
Score = 65.5 bits (158), Expect = 4e-10
Identities = 25/45 (55%), Positives = 35/45 (77%)
Frame = -1
Query: 483 CAICLTNGKDLAFGCGHMSCRDCGSRLSNCHICRERITSRLRVFT 349
C ICLTN KD+AF CGH++C++CG LS C +CR IT R+R+++
Sbjct: 358 CPICLTNPKDMAFQCGHLTCKECGPTLSTCPLCRVPITMRVRLYS 402
>ref|NP_196946.1| putative protein; protein id: At5g14420.1, supported by cDNA:
gi_20466261 [Arabidopsis thaliana]
gi|11357547|pir||T48615 hypothetical protein F18O22.210
- Arabidopsis thaliana gi|7573467|emb|CAB87781.1|
putative protein [Arabidopsis thaliana]
gi|20466262|gb|AAM20448.1| putative protein [Arabidopsis
thaliana] gi|23198082|gb|AAN15568.1| putative protein
[Arabidopsis thaliana]
Length = 468
Score = 60.5 bits (145), Expect = 1e-08
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = -1
Query: 495 NQMECAICLTNGKDLAFGCGHMSCRDCGSRLSNCHICRERITSRLRVF 352
NQ+ C ICL+N KD+AFGCGH +C +CG L C ICR I +R++++
Sbjct: 422 NQL-CPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468
>ref|NP_186814.1| unknown protein; protein id: At3g01650.1 [Arabidopsis thaliana]
gi|6016736|gb|AAF01562.1|AC009325_32 unknown protein
[Arabidopsis thaliana]
Length = 489
Score = 60.5 bits (145), Expect = 1e-08
Identities = 28/66 (42%), Positives = 41/66 (61%)
Frame = -1
Query: 549 VPRAHFRSNMAASMEDERNQMECAICLTNGKDLAFGCGHMSCRDCGSRLSNCHICRERIT 370
VP F S +S +D + C ICL+N K++AFGCGH +C +CG L C ICR I
Sbjct: 427 VPPYPFESKQMSSADDIQL---CPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQ 483
Query: 369 SRLRVF 352
+R++++
Sbjct: 484 TRIKLY 489
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,126,463
Number of Sequences: 1393205
Number of extensions: 11273620
Number of successful extensions: 29480
Number of sequences better than 10.0: 301
Number of HSP's better than 10.0 without gapping: 28223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29400
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
