Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003834A_C01 KMC003834A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195130.1| putative protein; protein id: At4g34040.1 [Arab... 179 1e-44
ref|NP_179155.1| putative RING zinc finger protein; protein id: ... 162 2e-39
ref|NP_199108.1| putative protein; protein id: At5g42940.1, supp... 160 6e-39
pir||T51859 RING-H2 finger protein RHG1a [imported] - Arabidopsi... 159 2e-38
ref|NP_175132.1| hypothetical protein; protein id: At1g45180.1 [... 158 3e-38
>ref|NP_195130.1| putative protein; protein id: At4g34040.1 [Arabidopsis thaliana]
gi|7486285|pir||T05432 hypothetical protein F28A23.200 -
Arabidopsis thaliana gi|2911058|emb|CAA17568.1| putative
protein [Arabidopsis thaliana]
gi|7270353|emb|CAB80121.1| putative protein [Arabidopsis
thaliana]
Length = 666
Score = 179 bits (455), Expect = 1e-44
Identities = 82/115 (71%), Positives = 96/115 (83%)
Frame = -2
Query: 524 YHGLAEMHDRHREMRLDVDNMSYEELLALEEQIGDVSTGLSEDNIHKLMKQRLYISFMAE 345
Y G+AEMHDRHR+MRLDVDNMSYEELLAL E+IGDVSTGLSE+ I K+MKQ + S A
Sbjct: 552 YQGMAEMHDRHRDMRLDVDNMSYEELLALGERIGDVSTGLSEEVILKVMKQHKHTSSAAG 611
Query: 344 SSSDPEPCCICQEQYANGEIIGSLDCGHEFHTKCIKQWLVQKNLCPICKTTALAT 180
S D EPCC+CQE+YA G+ +G+L CGHEFHT C+KQWL+ KNLCPICKT AL+T
Sbjct: 612 SHQDMEPCCVCQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICKTVALST 666
>ref|NP_179155.1| putative RING zinc finger protein; protein id: At2g15530.1
[Arabidopsis thaliana] gi|25411642|pir||B84530 probable
RING zinc finger protein [imported] - Arabidopsis
thaliana gi|4335719|gb|AAD17397.1| putative RING zinc
finger protein [Arabidopsis thaliana]
Length = 704
Score = 162 bits (411), Expect = 2e-39
Identities = 78/118 (66%), Positives = 90/118 (76%), Gaps = 3/118 (2%)
Frame = -2
Query: 524 YHGLAEMHDRHREMRLDVDNMSYEELLALEEQIGDVSTGLSEDNIHKLMKQRLYISFMAE 345
Y G+ +MHDRHREMRLDVDNMSYEELLAL E+IGDVSTGLSE+ I K MKQ + S
Sbjct: 586 YQGMTDMHDRHREMRLDVDNMSYEELLALGERIGDVSTGLSEEVILKAMKQHKHTSSSPS 645
Query: 344 S---SSDPEPCCICQEQYANGEIIGSLDCGHEFHTKCIKQWLVQKNLCPICKTTALAT 180
S + EPCCICQE+Y G+ +G+L CGHEFH CIKQW++ KNLCPICKT AL T
Sbjct: 646 SVELHQNIEPCCICQEEYVEGDNLGTLKCGHEFHKDCIKQWVMIKNLCPICKTEALKT 703
>ref|NP_199108.1| putative protein; protein id: At5g42940.1, supported by cDNA:
gi_18087615 [Arabidopsis thaliana]
gi|9758583|dbj|BAB09196.1| contains similarity to RING
zinc finger protein~gene_id:MBD2.14 [Arabidopsis
thaliana] gi|18087616|gb|AAL58938.1|AF462851_1
AT5g42940/MBD2_14 [Arabidopsis thaliana]
gi|28416527|gb|AAO42794.1| At5g42940/MBD2_14
[Arabidopsis thaliana]
Length = 691
Score = 160 bits (406), Expect = 6e-39
Identities = 73/108 (67%), Positives = 89/108 (81%)
Frame = -2
Query: 503 HDRHREMRLDVDNMSYEELLALEEQIGDVSTGLSEDNIHKLMKQRLYISFMAESSSDPEP 324
HDR+R+MRLDVDNMSYEELLALEE+IGDV TG++E+ I +KQR Y S +S D EP
Sbjct: 578 HDRYRDMRLDVDNMSYEELLALEERIGDVCTGVNEETISNRLKQRKYKS-NTKSPQDAEP 636
Query: 323 CCICQEQYANGEIIGSLDCGHEFHTKCIKQWLVQKNLCPICKTTALAT 180
CC+CQE+Y GE +G+L+CGHEFH++CIK+WL QKNLCPICKTT L T
Sbjct: 637 CCVCQEEYTEGEDMGTLECGHEFHSQCIKEWLKQKNLCPICKTTGLNT 684
>pir||T51859 RING-H2 finger protein RHG1a [imported] - Arabidopsis thaliana
(fragment) gi|3822225|gb|AAC69857.1| RING-H2 finger
protein RHG1a [Arabidopsis thaliana]
Length = 190
Score = 159 bits (402), Expect = 2e-38
Identities = 72/108 (66%), Positives = 89/108 (81%)
Frame = -2
Query: 503 HDRHREMRLDVDNMSYEELLALEEQIGDVSTGLSEDNIHKLMKQRLYISFMAESSSDPEP 324
HDR+R+MRLDVDNMSYEELLALEE+IGDV TG++E+ I +KQR Y S +S D EP
Sbjct: 77 HDRYRDMRLDVDNMSYEELLALEERIGDVCTGVNEETISNRLKQRKYKS-NTKSPQDAEP 135
Query: 323 CCICQEQYANGEIIGSLDCGHEFHTKCIKQWLVQKNLCPICKTTALAT 180
CC+CQE+Y GE +G+L+CGHEFH++CI++WL QKNLCPICKTT L T
Sbjct: 136 CCVCQEEYTEGEDMGTLECGHEFHSQCIEEWLKQKNLCPICKTTGLNT 183
>ref|NP_175132.1| hypothetical protein; protein id: At1g45180.1 [Arabidopsis
thaliana] gi|7767667|gb|AAF69164.1|AC007915_16 F27F5.26
[Arabidopsis thaliana]
Length = 645
Score = 158 bits (400), Expect = 3e-38
Identities = 72/113 (63%), Positives = 91/113 (79%)
Frame = -2
Query: 518 GLAEMHDRHREMRLDVDNMSYEELLALEEQIGDVSTGLSEDNIHKLMKQRLYISFMAESS 339
G A++HDR+R+MRLDVDNM+YEELL+LEE+IGDV TGL+E+ I +KQ+ Y S SS
Sbjct: 528 GAADIHDRYRDMRLDVDNMTYEELLSLEERIGDVCTGLNEETISNRLKQQKYKS-STRSS 586
Query: 338 SDPEPCCICQEQYANGEIIGSLDCGHEFHTKCIKQWLVQKNLCPICKTTALAT 180
+ EPCC+CQE+Y E IG L+CGH+FH++CIK+WL QKNLCPICKTT L T
Sbjct: 587 QEVEPCCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKTTGLNT 639
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,088,795
Number of Sequences: 1393205
Number of extensions: 8277874
Number of successful extensions: 21996
Number of sequences better than 10.0: 1206
Number of HSP's better than 10.0 without gapping: 21189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21868
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
