Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003809A_C01 KMC003809A_c01
(717 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA04703.1| cytochome b5 [Olea europaea] 237 1e-61
ref|NP_200168.1| cytochrome b5 (dbj|BAA74839.1); protein id: At5... 218 9e-56
sp|P40934|CYB5_BRAOL Cytochrome B5 gi|7430587|pir||T14454 cytoch... 216 2e-55
gb|AAM28288.1| cytochrome b5 [Ananas comosus] 214 1e-54
gb|AAK39593.1|AC025296_28 putative cytochrome [Oryza sativa] 198 5e-50
>emb|CAA04703.1| cytochome b5 [Olea europaea]
Length = 134
Score = 237 bits (604), Expect = 1e-61
Identities = 109/134 (81%), Positives = 123/134 (91%)
Frame = -1
Query: 657 MASDPKVHLFEDVVKHSEIKDCWLIIDGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFE 478
MASDPK++++E+V KH + KDCWL+I+GKVYDVTPFM+DHPGGDEVLLSATGKDATNDFE
Sbjct: 1 MASDPKIYVYEEVEKHDKTKDCWLVINGKVYDVTPFMDDHPGGDEVLLSATGKDATNDFE 60
Query: 477 DVGHSDSARDMMEKYYIGEIDPSTVPLKRTYVPPPHTQYNPDKTSEFVIKILQFLVPLLI 298
DVGHSDSAR+MM+KYYIGEID STVP KRTY PP QYNPDKT EF+IKILQFLVPLLI
Sbjct: 61 DVGHSDSAREMMDKYYIGEIDVSTVPTKRTYTPPQQAQYNPDKTPEFLIKILQFLVPLLI 120
Query: 297 LGLAFAVRHYTKKE 256
LGLAF VRHYTK++
Sbjct: 121 LGLAFVVRHYTKEK 134
>ref|NP_200168.1| cytochrome b5 (dbj|BAA74839.1); protein id: At5g53560.1, supported
by cDNA: 31303., supported by cDNA: gi_19423893,
supported by cDNA: gi_21281007, supported by cDNA:
gi_4240119 [Arabidopsis thaliana]
gi|18206375|sp|Q42342|CY51_ARATH Cytochrome b5 isoform 1
gi|25282550|pir||T52469 cytochrome b5 [imported] -
Arabidopsis thaliana gi|4240120|dbj|BAA74839.1|
cytochrome b5 [Arabidopsis thaliana]
gi|9759195|dbj|BAB09732.1| cytochrome b5 [Arabidopsis
thaliana] gi|19423894|gb|AAL87348.1| putative cytochrome
b5 protein [Arabidopsis thaliana]
gi|21281008|gb|AAM45093.1| putative cytochrome b5
protein [Arabidopsis thaliana]
gi|21592682|gb|AAM64631.1| cytochrome b5
(dbj|BAA74839.1) [Arabidopsis thaliana]
Length = 134
Score = 218 bits (554), Expect = 9e-56
Identities = 103/134 (76%), Positives = 116/134 (85%)
Frame = -1
Query: 657 MASDPKVHLFEDVVKHSEIKDCWLIIDGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFE 478
M+SD KV FE+V KH++ KDCWLII GKVYDVTPFM+DHPGGDEVLLS+TGKDATNDFE
Sbjct: 1 MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFE 60
Query: 477 DVGHSDSARDMMEKYYIGEIDPSTVPLKRTYVPPPHTQYNPDKTSEFVIKILQFLVPLLI 298
DVGHSD+ARDMM+KY+IGEID S+VP RTYV P YN DKT EF+IKILQFLVP+LI
Sbjct: 61 DVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILI 120
Query: 297 LGLAFAVRHYTKKE 256
LGLA VRHYTKK+
Sbjct: 121 LGLALVVRHYTKKD 134
>sp|P40934|CYB5_BRAOL Cytochrome B5 gi|7430587|pir||T14454 cytochrome b5 - wild cabbage
gi|167140|gb|AAA32990.1| cytochrome b-5
gi|384338|prf||1905426A cytochrome b5
Length = 134
Score = 216 bits (551), Expect = 2e-55
Identities = 105/134 (78%), Positives = 115/134 (85%)
Frame = -1
Query: 657 MASDPKVHLFEDVVKHSEIKDCWLIIDGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFE 478
MAS+ KV FE+V +H++ KDCWLII GKVYDVTPFM+DHPGGDEVLLS+TGKDATNDFE
Sbjct: 1 MASEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFE 60
Query: 477 DVGHSDSARDMMEKYYIGEIDPSTVPLKRTYVPPPHTQYNPDKTSEFVIKILQFLVPLLI 298
DVGHSD+ARDMMEKYYIGEID STVP RTYV P YN DKT EF+IKILQFLVP+LI
Sbjct: 61 DVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILI 120
Query: 297 LGLAFAVRHYTKKE 256
LGLA VR YTKKE
Sbjct: 121 LGLALVVRQYTKKE 134
>gb|AAM28288.1| cytochrome b5 [Ananas comosus]
Length = 134
Score = 214 bits (544), Expect = 1e-54
Identities = 99/132 (75%), Positives = 116/132 (87%)
Frame = -1
Query: 657 MASDPKVHLFEDVVKHSEIKDCWLIIDGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFE 478
MA+D K++ FE+V KH+ KDCWLII GKVYDVTPFM++HPGGDEVLL+ATGKDATNDFE
Sbjct: 1 MATDHKIYGFEEVAKHNATKDCWLIISGKVYDVTPFMDEHPGGDEVLLAATGKDATNDFE 60
Query: 477 DVGHSDSARDMMEKYYIGEIDPSTVPLKRTYVPPPHTQYNPDKTSEFVIKILQFLVPLLI 298
DVGHS+SAR+MM KY IGEID +TVP KR Y+ P YNPDK+S+F+IKILQFLVP+LI
Sbjct: 61 DVGHSNSAREMMAKYCIGEIDAATVPAKRAYIAPQQASYNPDKSSDFLIKILQFLVPILI 120
Query: 297 LGLAFAVRHYTK 262
LGLAFAVRH+TK
Sbjct: 121 LGLAFAVRHFTK 132
>gb|AAK39593.1|AC025296_28 putative cytochrome [Oryza sativa]
Length = 134
Score = 198 bits (504), Expect = 5e-50
Identities = 94/134 (70%), Positives = 110/134 (81%)
Frame = -1
Query: 657 MASDPKVHLFEDVVKHSEIKDCWLIIDGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFE 478
MA + KV FE+V H+ KDCWLII GKVYDVT FM++HPGGDEVLL+ TGKDATNDFE
Sbjct: 1 MAGEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFE 60
Query: 477 DVGHSDSARDMMEKYYIGEIDPSTVPLKRTYVPPPHTQYNPDKTSEFVIKILQFLVPLLI 298
D+GHS+SAR+MMEKY IGEID ST+P+KRT+V P NPDK + +IKILQFLVP+LI
Sbjct: 61 DIGHSESAREMMEKYLIGEIDASTIPVKRTHVTPQQAPGNPDKGDDMLIKILQFLVPILI 120
Query: 297 LGLAFAVRHYTKKE 256
LGLAFA+R YTK E
Sbjct: 121 LGLAFAIRQYTKSE 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,412,060
Number of Sequences: 1393205
Number of extensions: 13080636
Number of successful extensions: 30113
Number of sequences better than 10.0: 418
Number of HSP's better than 10.0 without gapping: 29059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29992
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
