Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003807A_C01 KMC003807A_c01
(456 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T14329 dermal glycoprotein precursor, extracellular - carro... 122 2e-27
ref|NP_171821.1| unknown protein; protein id: At1g03220.1, suppo... 121 3e-27
gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana] 120 7e-27
gb|AAN87262.1| xyloglucan-specific fungal endoglucanase inhibito... 119 1e-26
ref|NP_197411.1| dermal glycoprotein precursor -like protein; pr... 118 2e-26
>pir||T14329 dermal glycoprotein precursor, extracellular - carrot (fragment)
gi|285741|dbj|BAA03413.1| EDGP precursor [Daucus carota]
Length = 433
Score = 122 bits (306), Expect = 2e-27
Identities = 60/100 (60%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Frame = -1
Query: 456 PFGACFDLSTIGKTITGLDVPTIDLVLQGD-VEWTIYGGNSMVLVNEKVACLGFVDGGKT 280
PFGACF I T G VP+IDLVLQ + V WTI G NSMV +N+ V CLG VDGG
Sbjct: 328 PFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSN 387
Query: 279 ARTAVVIGGHQLEDNLVEFDLGSSKLGFSSSLLLQNATCS 160
RT++VIGGHQLEDNLV+FDL +S++GFS +LL TC+
Sbjct: 388 LRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCA 427
>ref|NP_171821.1| unknown protein; protein id: At1g03220.1, supported by cDNA:
12454., supported by cDNA: gi_13272442, supported by
cDNA: gi_14334705, supported by cDNA: gi_16323419
[Arabidopsis thaliana] gi|25296172|pir||F86163
hypothetical protein F15K9.17 - Arabidopsis thaliana
gi|3850579|gb|AAC72119.1| Strong similarity to gb|D14550
extracellular dermal glycoprotein (EDGP) precursor from
Daucus carota. ESTs gb|H37281, gb|T44167, gb|T21813,
gb|N38437, gb|Z26470, gb|R65072, gb|N76373, gb|F15470,
gb|Z35182, gb|H76373, gb|Z34678 and gb|Z35387 come from
this gene. [Arabidopsis thaliana]
gi|13272443|gb|AAK17160.1|AF325092_1 unknown protein
[Arabidopsis thaliana] gi|14334706|gb|AAK59531.1|
unknown protein [Arabidopsis thaliana]
gi|16323420|gb|AAL15204.1| unknown protein [Arabidopsis
thaliana]
Length = 433
Score = 121 bits (304), Expect = 3e-27
Identities = 61/100 (61%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Frame = -1
Query: 456 PFGACFDLSTIGKTITGLDVPTIDLVLQG-DVEWTIYGGNSMVLVNEKVACLGFVDGGKT 280
PFGACF +G T G VP I+LVL DV W I+G NSMV V++ V CLGFVDGG
Sbjct: 326 PFGACFSTKNVGVTRLGYAVPEIELVLHSKDVVWRIFGANSMVSVSDDVICLGFVDGGVN 385
Query: 279 ARTAVVIGGHQLEDNLVEFDLGSSKLGFSSSLLLQNATCS 160
ART+VVIGG QLEDNL+EFDL S+K GFSS+LL + C+
Sbjct: 386 ARTSVVIGGFQLEDNLIEFDLASNKFGFSSTLLGRQTNCA 425
>gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana]
Length = 433
Score = 120 bits (301), Expect = 7e-27
Identities = 60/100 (60%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Frame = -1
Query: 456 PFGACFDLSTIGKTITGLDVPTIDLVLQG-DVEWTIYGGNSMVLVNEKVACLGFVDGGKT 280
PFGACF +G T G VP I+LVL DV W I+G NSMV V++ V CLGFVDGG
Sbjct: 326 PFGACFSTKNVGVTRLGYAVPEIELVLHSKDVVWRIFGANSMVSVSDDVICLGFVDGGVN 385
Query: 279 ARTAVVIGGHQLEDNLVEFDLGSSKLGFSSSLLLQNATCS 160
ART+VVIGG QLEDNL+EFDL S++ GFSS+LL + C+
Sbjct: 386 ARTSVVIGGFQLEDNLIEFDLASNRFGFSSTLLGRQTNCA 425
>gb|AAN87262.1| xyloglucan-specific fungal endoglucanase inhibitor protein
precursor [Lycopersicon esculentum]
Length = 438
Score = 119 bits (298), Expect = 1e-26
Identities = 58/99 (58%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Frame = -1
Query: 456 PFGACFDLSTIGKTITGLDVPTIDLVLQG-DVEWTIYGGNSMVLVNEKVACLGFVDGGKT 280
PF CFD IG T G VP+IDLVLQ +V WTI+G NSMV V+E V CLG +DGG
Sbjct: 331 PFRVCFDSRDIGSTRVGPAVPSIDLVLQNANVVWTIFGANSMVQVSENVLCLGVLDGGVN 390
Query: 279 ARTAVVIGGHQLEDNLVEFDLGSSKLGFSSSLLLQNATC 163
ART++VIGGH +EDNL++FD +S+LGF+SS+L + TC
Sbjct: 391 ARTSIVIGGHTIEDNLLQFDHAASRLGFTSSILFRQTTC 429
>ref|NP_197411.1| dermal glycoprotein precursor -like protein; protein id:
At5g19100.1 [Arabidopsis thaliana]
Length = 391
Score = 118 bits (296), Expect = 2e-26
Identities = 61/106 (57%), Positives = 71/106 (66%)
Frame = -1
Query: 456 PFGACFDLSTIGKTITGLDVPTIDLVLQGDVEWTIYGGNSMVLVNEKVACLGFVDGGKTA 277
PFGACF + G VP IDLVL G +W IYG NS+V VN+ V CLGFVDGG
Sbjct: 292 PFGACFYSNG------GRGVPVIDLVLSGGAKWRIYGSNSLVKVNKNVVCLGFVDGGVKP 345
Query: 276 RTAVVIGGHQLEDNLVEFDLGSSKLGFSSSLLLQNATCSPSKASSF 139
+ +VIGG Q+EDNLVEFDL +SK FSSSLLL N +CS + S F
Sbjct: 346 KYPIVIGGFQMEDNLVEFDLEASKFSFSSSLLLHNTSCSVQRLSPF 391
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,632,602
Number of Sequences: 1393205
Number of extensions: 9643279
Number of successful extensions: 22465
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 21622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22421
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
