Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003805A_C01 KMC003805A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174321.1| hypothetical protein; protein id: At1g30300.1 [... 122 3e-27
gb|AAG51097.1|AC025295_5 hypothetical protein, 5' partial [Arabi... 92 5e-18
ref|NP_192270.1| putative hydrolase; protein id: At4g03610.1 [Ar... 72 4e-12
dbj|BAB02903.1| hydrolase-like protein [Arabidopsis thaliana] 62 4e-09
ref|NP_701724.1| hypothetical protein [Plasmodium falciparum 3D7... 46 4e-04
>ref|NP_174321.1| hypothetical protein; protein id: At1g30300.1 [Arabidopsis
thaliana] gi|25513552|pir||D86427 36.3K hypothetical
protein F12P21.8 - Arabidopsis thaliana
gi|12320859|gb|AAG50569.1|AC073506_11 hypothetical
protein [Arabidopsis thaliana]
Length = 323
Score = 122 bits (307), Expect = 3e-27
Identities = 57/81 (70%), Positives = 64/81 (78%)
Frame = -1
Query: 596 DALYKTGSHNVHFCLPQTLETVKRLCPKKTLLVGMNHEFDHHKDNEFLMEWSRRVVSSIM 417
D LYKTGSHN H C PQTL+T+KRL PK+ LL+GM HEFDHHKDNEFL EWS+
Sbjct: 252 DTLYKTGSHNTHLCFPQTLDTIKRLSPKRALLIGMTHEFDHHKDNEFLEEWSK------- 304
Query: 416 LLREGISVQLAHDGLRVPINL 354
REGISV+LAHDGLRVPI+L
Sbjct: 305 --REGISVKLAHDGLRVPIDL 323
>gb|AAG51097.1|AC025295_5 hypothetical protein, 5' partial [Arabidopsis thaliana]
Length = 55
Score = 92.0 bits (227), Expect = 5e-18
Identities = 44/64 (68%), Positives = 51/64 (78%)
Frame = -1
Query: 545 TLETVKRLCPKKTLLVGMNHEFDHHKDNEFLMEWSRRVVSSIMLLREGISVQLAHDGLRV 366
TL+T+KRL PK+ LL+GM HEFDHHKDNEFL EWS+ REGISV+LAHDGLRV
Sbjct: 1 TLDTIKRLSPKRALLIGMTHEFDHHKDNEFLEEWSK---------REGISVKLAHDGLRV 51
Query: 365 PINL 354
PI+L
Sbjct: 52 PIDL 55
>ref|NP_192270.1| putative hydrolase; protein id: At4g03610.1 [Arabidopsis thaliana]
gi|25407219|pir||G85045 probable hydrolase [imported] -
Arabidopsis thaliana gi|4263048|gb|AAD15317.1| putative
hydrolase [Arabidopsis thaliana]
gi|7270684|emb|CAB77846.1| putative hydrolase
[Arabidopsis thaliana]
Length = 290
Score = 72.4 bits (176), Expect = 4e-12
Identities = 30/51 (58%), Positives = 35/51 (67%)
Frame = -1
Query: 587 YKTGSHNVHFCLPQTLETVKRLCPKKTLLVGMNHEFDHHKDNEFLMEWSRR 435
+K G H H C + LE +KRLCPK+ LL GM HEFDHH+ NE L EWS R
Sbjct: 235 WKRGPHPTHICFTEALEILKRLCPKRALLTGMTHEFDHHEYNEILAEWSLR 285
>dbj|BAB02903.1| hydrolase-like protein [Arabidopsis thaliana]
Length = 309
Score = 62.4 bits (150), Expect = 4e-09
Identities = 35/81 (43%), Positives = 48/81 (59%)
Frame = -1
Query: 596 DALYKTGSHNVHFCLPQTLETVKRLCPKKTLLVGMNHEFDHHKDNEFLMEWSRRVVSSIM 417
DAL S HF LP+ LE V+++ PK+TL GM H DH K +E L + +
Sbjct: 238 DALRPDRSSATHFGLPRALEEVRKIKPKRTLFTGMMHLMDHEKVSEELEK---------L 288
Query: 416 LLREGISVQLAHDGLRVPINL 354
EG+ VQL++DGLRVPI++
Sbjct: 289 RNTEGLDVQLSYDGLRVPISI 309
>ref|NP_701724.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496896|gb|AAN36448.1|AE014850_13 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 438
Score = 45.8 bits (107), Expect = 4e-04
Identities = 25/80 (31%), Positives = 41/80 (51%)
Frame = -1
Query: 596 DALYKTGSHNVHFCLPQTLETVKRLCPKKTLLVGMNHEFDHHKDNEFLMEWSRRVVSSIM 417
DAL+ H HF L +++ ++ PK+ +GM+ + +H+ N FL + S +
Sbjct: 366 DALFYKRKHYSHFSLYESINIALQIKPKQVFFIGMSCDIEHNITNLFLEKLSAKY----- 420
Query: 416 LLREGISVQLAHDGLRVPIN 357
I+ LAHDGL +P N
Sbjct: 421 ---SDITFSLAHDGLFLPFN 437
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,951,335
Number of Sequences: 1393205
Number of extensions: 10196245
Number of successful extensions: 32939
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 30979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32791
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
