Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003798A_C01 KMC003798A_c01
(787 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176467.1| unknown protein; protein id: At1g62790.1 [Arabi... 115 7e-25
gb|AAF19539.1|AC007190_7 F23N19.16 [Arabidopsis thaliana] 90 3e-17
ref|NP_565067.1| lipid transfer protein, putative; protein id: A... 81 2e-14
gb|AAM65563.1| lipid transfer protein, putative [Arabidopsis tha... 80 3e-14
ref|NP_177181.1| lipid transfer protein, putative; protein id: A... 79 7e-14
>ref|NP_176467.1| unknown protein; protein id: At1g62790.1 [Arabidopsis thaliana]
Length = 150
Score = 115 bits (288), Expect = 7e-25
Identities = 63/148 (42%), Positives = 95/148 (63%), Gaps = 5/148 (3%)
Frame = -2
Query: 711 LMMVALVFTIGAIFF-STAQAQSSIPSCAQNLILCADYLTSTNSPAS-CCDAIKKTVETQ 538
+M+ A T+ A+ T +AQ+ C L+ C + L +T +P CCD+IK+ VE +
Sbjct: 5 MMIFAAAMTVMALLLVPTIEAQTE---CVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKE 61
Query: 537 LTCLCNLFYSPGLLQSFKISTDQALQLSRRCGVTSDLSSCKSGSAPSP-ASVPPPATPGS 361
LTCLC ++ SPGLL F ++T++AL LSRRC VT+DLS+C + APSP AS+PPPA G+
Sbjct: 62 LTCLCTIYTSPGLLAQFNVTTEKALGLSRRCNVTTDLSACTAKGAPSPKASLPPPAPAGN 121
Query: 360 DK--GSSAGRVSFAGVSTLLLLWSSMLF 283
K + +++ GV+T++L S +F
Sbjct: 122 TKKDAGAGNKLAGYGVTTVILSLISSIF 149
>gb|AAF19539.1|AC007190_7 F23N19.16 [Arabidopsis thaliana]
Length = 114
Score = 90.1 bits (222), Expect = 3e-17
Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Frame = -2
Query: 711 LMMVALVFTIGAIFF-STAQAQSSIPSCAQNLILCADYLTSTNSPAS-CCDAIKKTVETQ 538
+M+ A T+ A+ T +AQ+ C L+ C + L +T +P CCD+IK+ VE +
Sbjct: 5 MMIFAAAMTVMALLLVPTIEAQTE---CVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKE 61
Query: 537 LTCLCNLFYSPGLLQSFKISTDQALQLSRRCGVTSDLSSC 418
LTCLC ++ SPGLL F ++T++AL LSRRC VT+DLS+C
Sbjct: 62 LTCLCTIYTSPGLLAQFNVTTEKALGLSRRCNVTTDLSAC 101
>ref|NP_565067.1| lipid transfer protein, putative; protein id: At1g73560.1,
supported by cDNA: 4043. [Arabidopsis thaliana]
Length = 147
Score = 81.3 bits (199), Expect = 2e-14
Identities = 51/146 (34%), Positives = 75/146 (50%), Gaps = 6/146 (4%)
Frame = -2
Query: 702 VALVFTIGAIFFSTAQAQSSIP---SCAQNLILCADYLTSTNSPA--SCCDAIKKTVETQ 538
+A+V + ++ A AQ P +C Q L+ C Y+ S N P SCC +K+ VE
Sbjct: 7 LAVVVAVVVLYSVEATAQGGNPQLTACLQKLLPCQPYIHSLNPPPPPSCCGPMKEIVEKD 66
Query: 537 LTCLCNLFYSPGLLQSFKISTDQALQLSRRCGVTSDLSSCKSGSAPSPASVPPPATPGSD 358
CLC F +P +L++ ++ + AL L + CGV D+S C + PSP A+PGS
Sbjct: 67 APCLCIAFNNPEVLKALNLTKENALLLPKACGVNPDVSLCSKIATPSPI-----ASPGST 121
Query: 357 KG-SSAGRVSFAGVSTLLLLWSSMLF 283
G SSA +SF S L + + F
Sbjct: 122 NGTSSASTISFNRFSFLSAFVAMIFF 147
>gb|AAM65563.1| lipid transfer protein, putative [Arabidopsis thaliana]
Length = 147
Score = 80.1 bits (196), Expect = 3e-14
Identities = 50/146 (34%), Positives = 73/146 (49%), Gaps = 6/146 (4%)
Frame = -2
Query: 702 VALVFTIGAIFFSTAQAQSSIP---SCAQNLILCADYLTSTNSPA--SCCDAIKKTVETQ 538
+A+V + ++ A AQ P +C L+ C Y+ S N P SCC +K+ VE
Sbjct: 7 LAVVVVVVVLYSVEATAQGGSPQLTACLHKLLPCQPYIHSLNPPPPPSCCGPMKEIVEKD 66
Query: 537 LTCLCNLFYSPGLLQSFKISTDQALQLSRRCGVTSDLSSCKSGSAPSPASVPPPATPGSD 358
CLC F +P +L++ ++ + AL L CGV D+S C + PSP A+PGS
Sbjct: 67 APCLCTAFNNPEVLKALNLTKENALLLPNACGVNPDVSLCSKIATPSPI-----ASPGST 121
Query: 357 KG-SSAGRVSFAGVSTLLLLWSSMLF 283
G SSA +SF S L + + F
Sbjct: 122 NGTSSASTISFNRFSFLSAFVAMIFF 147
>ref|NP_177181.1| lipid transfer protein, putative; protein id: At1g70240.1
[Arabidopsis thaliana] gi|25406043|pir||D96725
hypothetical protein F20P5.4 [imported] - Arabidopsis
thaliana gi|2194118|gb|AAB61093.1| F20P5.4 gene product
[Arabidopsis thaliana]
Length = 104
Score = 79.0 bits (193), Expect = 7e-14
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = -2
Query: 633 CAQNLILCADYLTSTNSPAS-CCDAIKKTVETQLTCLCNLFYSPGLLQSFKISTDQALQL 457
C ++ C +L +T P++ CC++IK+ +E +CLC ++ +PGLL F I+TDQAL L
Sbjct: 18 CVSKIVPCFRFLNTTTKPSTDCCNSIKEAMEKDFSCLCTIYNTPGLLAQFNITTDQALGL 77
Query: 456 SRRCGVTSDLSSC 418
+ RCGV +DLS+C
Sbjct: 78 NLRCGVNTDLSAC 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 624,059,414
Number of Sequences: 1393205
Number of extensions: 12978528
Number of successful extensions: 56625
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 50070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56175
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39215601880
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
