Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003796A_C01 KMC003796A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA21643.1| phenylalanine ammonia-lyase [Populus kitakamiensis] 258 4e-68
gb|AAN52279.1|AF480619_1 phenylalanine ammonia-lyase [Populus tr... 257 9e-68
sp|P07218|PAL1_PHAVU Phenylalanine ammonia-lyase class I gi|8187... 256 1e-67
pir||A24727 phenylalanine ammonia-lyase (EC 4.3.1.5) - kidney be... 256 1e-67
prf||2001451A Phe ammonia lyase 254 4e-67
>dbj|BAA21643.1| phenylalanine ammonia-lyase [Populus kitakamiensis]
Length = 715
Score = 258 bits (659), Expect = 4e-68
Identities = 122/144 (84%), Positives = 132/144 (90%)
Frame = -3
Query: 591 ETLFAYIDDPCLATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPK 412
E +FAY DDPC ATYPLMQKLRQVLVDHAL NGENEK++ TS+FQKIA FEDELK+LLPK
Sbjct: 572 EDVFAYADDPCSATYPLMQKLRQVLVDHALANGENEKNASTSVFQKIAAFEDELKALLPK 631
Query: 411 EVESARAAYESGNPAIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEEFDKLFTAI 232
EVESARAAY+SGN AI NKI ECRSYPLYKFVREELGT LLTGE RSPGEEFDK+FTA+
Sbjct: 632 EVESARAAYDSGNSAIENKIKECRSYPLYKFVREELGTGLLTGENVRSPGEEFDKVFTAM 691
Query: 231 CQGKIIDPLMECLGEWNGAPLPIC 160
CQGKIIDP++ECLGEWNGAPLPIC
Sbjct: 692 CQGKIIDPMLECLGEWNGAPLPIC 715
>gb|AAN52279.1|AF480619_1 phenylalanine ammonia-lyase [Populus tremuloides]
Length = 714
Score = 257 bits (656), Expect = 9e-68
Identities = 121/144 (84%), Positives = 132/144 (91%)
Frame = -3
Query: 591 ETLFAYIDDPCLATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPK 412
E +FAY DDPC ATYPLMQKLRQVLVDHAL NGENEK++ TS+FQKIA FEDELK+LLPK
Sbjct: 571 EDVFAYADDPCSATYPLMQKLRQVLVDHALANGENEKNASTSVFQKIAAFEDELKALLPK 630
Query: 411 EVESARAAYESGNPAIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEEFDKLFTAI 232
EVESARAAY+SGN AI NKI ECRSYPLYKFVREELGT LLTGE RSPGEEFDK+FTA+
Sbjct: 631 EVESARAAYDSGNSAIENKIKECRSYPLYKFVREELGTGLLTGENVRSPGEEFDKVFTAM 690
Query: 231 CQGKIIDPLMECLGEWNGAPLPIC 160
C+GKIIDP++ECLGEWNGAPLPIC
Sbjct: 691 CEGKIIDPMLECLGEWNGAPLPIC 714
>sp|P07218|PAL1_PHAVU Phenylalanine ammonia-lyase class I gi|81876|pir||S04129
phenylalanine ammonia-lyase (EC 4.3.1.5) class I -
kidney bean (fragment)
Length = 506
Score = 256 bits (655), Expect = 1e-67
Identities = 123/144 (85%), Positives = 131/144 (90%)
Frame = -3
Query: 591 ETLFAYIDDPCLATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPK 412
E +F+YIDDP TYPLMQKLRQVLVDHAL+N ENEKD TSIFQKIATFE+ELK++LPK
Sbjct: 363 EYVFSYIDDPYSGTYPLMQKLRQVLVDHALINAENEKDVNTSIFQKIATFEEELKTILPK 422
Query: 411 EVESARAAYESGNPAIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEEFDKLFTAI 232
EVES RAAYESG AIPNKI ECRSYPLYKFVREELGT LLTGEK +SPGEEFDKLFTAI
Sbjct: 423 EVESTRAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAI 482
Query: 231 CQGKIIDPLMECLGEWNGAPLPIC 160
CQGKIIDPL+ECLGEWNGAPLPIC
Sbjct: 483 CQGKIIDPLLECLGEWNGAPLPIC 506
>pir||A24727 phenylalanine ammonia-lyase (EC 4.3.1.5) - kidney bean (fragment)
gi|169357|gb|AAA33770.1| phenylalanine ammonia-lyase (EC
4.3.1.5) gi|224727|prf||1111326A ammonia lyase,Phe
Length = 505
Score = 256 bits (655), Expect = 1e-67
Identities = 123/144 (85%), Positives = 131/144 (90%)
Frame = -3
Query: 591 ETLFAYIDDPCLATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPK 412
E +F+YIDDP TYPLMQKLRQVLVDHAL+N ENEKD TSIFQKIATFE+ELK++LPK
Sbjct: 362 EYVFSYIDDPYSGTYPLMQKLRQVLVDHALINAENEKDVNTSIFQKIATFEEELKTILPK 421
Query: 411 EVESARAAYESGNPAIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEEFDKLFTAI 232
EVES RAAYESG AIPNKI ECRSYPLYKFVREELGT LLTGEK +SPGEEFDKLFTAI
Sbjct: 422 EVESTRAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAI 481
Query: 231 CQGKIIDPLMECLGEWNGAPLPIC 160
CQGKIIDPL+ECLGEWNGAPLPIC
Sbjct: 482 CQGKIIDPLLECLGEWNGAPLPIC 505
>prf||2001451A Phe ammonia lyase
Length = 723
Score = 254 bits (650), Expect = 4e-67
Identities = 122/143 (85%), Positives = 132/143 (91%)
Frame = -3
Query: 591 ETLFAYIDDPCLATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPK 412
E +FAYIDDPC ATYPLMQKLRQVLVDHALVNGE+EK+ TSIFQKIATFEDELK+LLPK
Sbjct: 580 EHVFAYIDDPCSATYPLMQKLRQVLVDHALVNGESEKNLNTSIFQKIATFEDELKTLLPK 639
Query: 411 EVESARAAYESGNPAIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEEFDKLFTAI 232
EVES RAAYESGNP +PNKIN CRSYPLY+FVR+ELGT LLTGEK SPGEE DKLFTAI
Sbjct: 640 EVESTRAAYESGNPTVPNKINGCRSYPLYRFVRQELGTGLLTGEKVISPGEECDKLFTAI 699
Query: 231 CQGKIIDPLMECLGEWNGAPLPI 163
CQGKIIDPL++CLG+WNGAPLPI
Sbjct: 700 CQGKIIDPLLQCLGDWNGAPLPI 722
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,216,956
Number of Sequences: 1393205
Number of extensions: 11190375
Number of successful extensions: 31190
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 30062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31164
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
