KMC003795A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC003795A_C01 KMC003795A_c01
gatcagcaaggtaatgatcaattatcaacaagcctcatatggtatgggtacgtagctaag
tcgaatgaaggcaatcgaggTGTGCCCAGAATGAAGAAGAAGTGAGTAATCAAACAATCA
ACCAAGAAGCAGGAAGCTCTTACAAACCACTAACACAGAAACCTTGCCTTACAAACTGGC
CTTACAAACTACTAACAGTCTAACACAGAAACCTTAATCAAGAACGAAACGAGAAATGGA
AGATCCATAGCCAATATCACAGTGACAAAGACAAAAGCGTAGTAATTATTTTTGCATTAT
GTCATTGCCTAGAGTTTCTTCATGCTTAGGAAGAAGTCCTTTTTCTCTGCATGTGTCAAT
TGTTCCAGTGTACATATCCTCTAAGGCGTACTTAAATTGGAATCACATGTCTTTGATCTT
CTTTGATGAAAATCTGACAACATCCAATTGAGCTGGAAGATTCTTGAACTTAGTGGGGAC
ATTGTACTCAGGATAATTTTAGTTGATCAACTTAGCAATGTCATGGATATTAGCCAAATT
CAACAGATATACCTCCCTTCTCATTCAAGATGCTCGAACAGGAAGATGTGAGCAAGACAA
AGATCATCCAAGTACGTGGACGAATTGACATTGCTTTATGATCAG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003795A_C01 KMC003795A_c01
         (645 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD54273.1|AF167556_1 dihydroflavonol-4-reductase DFR1 [Glyci...   122  3e-27
gb|AAC25960.1| dihydroflavonol 4-reductase [Fragaria x ananassa]      109  3e-23
gb|AAD56578.1|AF184271_1 dihydroflavonol 4-reductase [Daucus car...   105  4e-22
dbj|BAA84939.1| dihydroflavonol 4-reductase [Camellia sinensis] ...   102  6e-21
gb|AAN63056.1| dihydroflavonol reductase [Populus tremuloides]        100  2e-20

>gb|AAD54273.1|AF167556_1 dihydroflavonol-4-reductase DFR1 [Glycine max]
          Length = 347

 Score =  122 bits (307), Expect = 3e-27
 Identities = 67/109 (61%), Positives = 77/109 (70%)
 Frame = -1

Query: 642 IIKQCQFVHVLG*SLSCSHLPVRAS*MRREVYLLNLANIHDIAKLIN*NYPEYNVPTKFK 463
           IIKQ QFVH+    L+   L        R +     A IHDIAKLIN  YPEY VPTKFK
Sbjct: 222 IIKQGQFVHLDDLCLAHIFLFEEPEVEGRYICSACDATIHDIAKLINQKYPEYKVPTKFK 281

Query: 462 NLPAQLDVVRFSSKKIKDM*FQFKYALEDMYTGTIDTCREKGLLPKHEE 316
           N+P QL++VRFSSKKI D+ F+FKY+LEDMYTG IDTCR+KGLLPK  E
Sbjct: 282 NIPDQLELVRFSSKKITDLGFKFKYSLEDMYTGAIDTCRDKGLLPKPAE 330

>gb|AAC25960.1| dihydroflavonol 4-reductase [Fragaria x ananassa]
          Length = 341

 Score =  109 bits (273), Expect = 3e-23
 Identities = 57/109 (52%), Positives = 73/109 (66%)
 Frame = -1

Query: 642 IIKQCQFVHVLG*SLSCSHLPVRAS*MRREVYLLNLANIHDIAKLIN*NYPEYNVPTKFK 463
           IIKQCQ+VH+     S   L   A    R +   + A IHDIAKL+N  YP+YNVP KFK
Sbjct: 224 IIKQCQYVHLDDLCQSHIFLYEHAKAEGRYICSSHDATIHDIAKLLNEKYPKYNVPKKFK 283

Query: 462 NLPAQLDVVRFSSKKIKDM*FQFKYALEDMYTGTIDTCREKGLLPKHEE 316
            +   L  + FSSKK+K+M F+FK++LEDM+TG +D CREKGLLP  +E
Sbjct: 284 GIEENLTNIHFSSKKLKEMGFEFKHSLEDMFTGAVDACREKGLLPLPQE 332

>gb|AAD56578.1|AF184271_1 dihydroflavonol 4-reductase [Daucus carota]
          Length = 380

 Score =  105 bits (263), Expect = 4e-22
 Identities = 58/118 (49%), Positives = 72/118 (60%)
 Frame = -1

Query: 642 IIKQCQFVHVLG*SLSCSHLPVRAS*MRREVYLLNLANIHDIAKLIN*NYPEYNVPTKFK 463
           IIKQCQ+VH+     S   L    +   R +   + A IHD+ KLI   +PEYNVPT+FK
Sbjct: 222 IIKQCQYVHLDDLCESQIFLYEHPTAQGRYICSSHDATIHDVVKLIREKWPEYNVPTEFK 281

Query: 462 NLPAQLDVVRFSSKKIKDM*FQFKYALEDMYTGTIDTCREKGLLPKHEETLGNDIMQK 289
            +   L V+ FSSKK+ DM F FKY LEDM+ G I+TCREKGLLP       ND  +K
Sbjct: 282 GIEKDLPVISFSSKKLTDMGFTFKYNLEDMFKGAIETCREKGLLPNSTTLQENDQEKK 339

>dbj|BAA84939.1| dihydroflavonol 4-reductase [Camellia sinensis]
           gi|6009513|dbj|BAA84940.1| dihydroflavonol 4-reductase
           [Camellia sinensis]
          Length = 347

 Score =  102 bits (253), Expect = 6e-21
 Identities = 57/105 (54%), Positives = 69/105 (65%)
 Frame = -1

Query: 642 IIKQCQFVHVLG*SLSCSHLPVRAS*MRREVYLLNLANIHDIAKLIN*NYPEYNVPTKFK 463
           IIKQ QFVH+     S   L  R     R +   + A IHD+AKL+   +PEYNVPT+FK
Sbjct: 230 IIKQGQFVHLDDLCESHIFLYERPQAEGRYICSSHDATIHDLAKLMREKWPEYNVPTEFK 289

Query: 462 NLPAQLDVVRFSSKKIKDM*FQFKYALEDMYTGTIDTCREKGLLP 328
            +   L VV FSSKK+  M F+FKY+LEDM+ G IDTCREKGLLP
Sbjct: 290 GIDKDLPVVSFSSKKLIGMGFEFKYSLEDMFRGAIDTCREKGLLP 334

>gb|AAN63056.1| dihydroflavonol reductase [Populus tremuloides]
          Length = 346

 Score =  100 bits (249), Expect = 2e-20
 Identities = 52/107 (48%), Positives = 72/107 (66%), Gaps = 2/107 (1%)
 Frame = -1

Query: 642 IIKQCQFVHVLG*SLSCSHLPVRAS*MRREVYLLNL--ANIHDIAKLIN*NYPEYNVPTK 469
           I+KQ  +VH+    L  SH+ +  +      Y+ N   ANIHD+A+L+   YPEYNVP K
Sbjct: 222 ILKQGHYVHLD--DLCMSHIFLYENPKAEGRYICNSDDANIHDLAQLLREKYPEYNVPDK 279

Query: 468 FKNLPAQLDVVRFSSKKIKDM*FQFKYALEDMYTGTIDTCREKGLLP 328
           FK++   L  V FSSKK+ D+ F+FKY+LEDM+ G ++TCREKGL+P
Sbjct: 280 FKDIDENLACVAFSSKKLTDLGFEFKYSLEDMFAGAVETCREKGLIP 326

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,847,022
Number of Sequences: 1393205
Number of extensions: 9891055
Number of successful extensions: 21206
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 20606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21118
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MPD008f08_f AV770542 1 272
2 GNf073c11 BP072762 92 313
3 MR042c01_f BP079235 97 478
4 SPD001b02_f BP044056 119 647




Lotus japonicus
Kazusa DNA Research Institute