Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003793A_C01 KMC003793A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00076184.1| hypothetical protein [Methanosarcina barkeri] 37 0.14
ref|NP_616210.1| predicted protein [Methanosarcina acetivorans s... 34 0.72
ref|NP_068270.1| PxORF51 peptide [Plutella xylostella granulovir... 34 0.94
ref|XP_235652.1| similar to Mucin 2 precursor (Intestinal mucin ... 33 2.1
>gb|ZP_00076184.1| hypothetical protein [Methanosarcina barkeri]
Length = 375
Score = 36.6 bits (83), Expect = 0.14
Identities = 24/88 (27%), Positives = 44/88 (49%), Gaps = 7/88 (7%)
Frame = +3
Query: 195 HSFLFGSVKWDLLYHPFLKSMVELELLPELISSSE-------TLQASI*NRTHSKVNLK* 353
HS + G+V +L Y+ ++ S+ ++ LP++I SS+ + Q + N+ + +NL
Sbjct: 89 HSLVEGNVNHELSYYAYIDSVTSIDELPDIIISSDINSFYHKSFQENFLNKEYF-INLNS 147
Query: 354 QPCNDTFF*LELPQHLLQYTSIATRFLV 437
P N F + Q+T I+ LV
Sbjct: 148 SPMNSNFESIGFADPRGQFTMISANLLV 175
>ref|NP_616210.1| predicted protein [Methanosarcina acetivorans str. C2A]
gi|19915116|gb|AAM04690.1| predicted protein
[Methanosarcina acetivorans str. C2A]
Length = 410
Score = 34.3 bits (77), Expect = 0.72
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = +3
Query: 195 HSFLFGSVKWDLLYHPFLKSMVELELLPELISSSE-------TLQASI*NRTHSKVNLK* 353
HS + G+V +L Y+ ++ + ++ LP++I SS+ + Q + N+ + VNL
Sbjct: 124 HSLVEGNVNHELSYYAYIDLVTSIDELPDIIISSDINSFYHKSFQENFLNKEYF-VNLNS 182
Query: 354 QPCNDTFF*LELPQHLLQYTSIATRFLV 437
P N F + Q+T I+ LV
Sbjct: 183 SPMNIDFESIGFADPRAQFTMISANLLV 210
>ref|NP_068270.1| PxORF51 peptide [Plutella xylostella granulovirus]
gi|11036846|gb|AAG27349.1|AF270937_51 PxORF51 peptide
[Plutella xylostella granulovirus]
Length = 386
Score = 33.9 bits (76), Expect = 0.94
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Frame = -2
Query: 181 DNQLTLRDNKKDYVYVLRCVKQCCPVKANDSQTYVFCKYLHEQIVS-----------IFL 35
+N +T+R+ D V +L C K PV N Q Y+ KY++ +V+ ++
Sbjct: 222 NNYVTIRNANIDNVVLLSCEKSSLPV-LNQLQQYIKAKYINVLLVTDNENYIHTHKIFYI 280
Query: 34 LHCMRFFYY 8
+ ++F+YY
Sbjct: 281 YNSLKFYYY 289
>ref|XP_235652.1| similar to Mucin 2 precursor (Intestinal mucin 2) [Rattus
norvegicus]
Length = 4817
Score = 32.7 bits (73), Expect = 2.1
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = +3
Query: 156 LSLNVSWLSAWDFHSFLFGSVKWDLLYHPFLKSMVELELLPELISS 293
LS +SWL W+F G++ D YH K +EL+PE++ S
Sbjct: 123 LSKTLSWLEEWNFVLSEVGAINMDEHYHWIAK----VELMPEMLKS 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,409,680
Number of Sequences: 1393205
Number of extensions: 7638559
Number of successful extensions: 17733
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17732
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
