Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003792A_C01 KMC003792A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65322.1| unknown [Arabidopsis thaliana] 210 1e-53
ref|NP_567542.1| expressed protein; protein id: At4g17840.1, sup... 209 2e-53
ref|NP_565802.1| expressed protein; protein id: At2g35260.1, sup... 208 5e-53
pir||T05070 hypothetical protein T6K21.20 - Arabidopsis thaliana... 195 5e-49
ref|NP_280685.1| Vng1993h [Halobacterium sp. NRC-1] gi|25410432|... 39 0.074
>gb|AAM65322.1| unknown [Arabidopsis thaliana]
Length = 423
Score = 210 bits (534), Expect = 1e-53
Identities = 98/129 (75%), Positives = 116/129 (88%)
Frame = -3
Query: 631 FVPFAQAFAAVLTAVLTGSLYYVAASPKDPTYIVAPVLQSRSGRQDLKKLFEAWYEKRQM 452
FVPFAQ FAA +TA LTGSLYYVAASPKDPTYI+APVL++RS R +LKKLF AWYE+RQM
Sbjct: 293 FVPFAQVFAATITAALTGSLYYVAASPKDPTYIMAPVLKTRSARDELKKLFAAWYERRQM 352
Query: 451 KKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSTVILGHGLWKINDHRRRLRQRIP 272
KKIYSPLLEGLL LYLGFEWIQTNN+LAPIITHGIYS V+LG+GLWK++ H++RLR R+
Sbjct: 353 KKIYSPLLEGLLGLYLGFEWIQTNNLLAPIITHGIYSAVVLGNGLWKLHHHQQRLRLRVQ 412
Query: 271 QLKSEEPNS 245
+L++E N+
Sbjct: 413 KLETEGDNN 421
>ref|NP_567542.1| expressed protein; protein id: At4g17840.1, supported by cDNA:
38412. [Arabidopsis thaliana]
Length = 422
Score = 209 bits (533), Expect = 2e-53
Identities = 97/129 (75%), Positives = 116/129 (89%)
Frame = -3
Query: 631 FVPFAQAFAAVLTAVLTGSLYYVAASPKDPTYIVAPVLQSRSGRQDLKKLFEAWYEKRQM 452
FVPFAQ FAA +TA LTGSLYY+AASPKDPTYI+APVL++RS R +LKKLF AWYE+RQM
Sbjct: 292 FVPFAQVFAATITAALTGSLYYIAASPKDPTYIMAPVLKTRSARDELKKLFAAWYERRQM 351
Query: 451 KKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSTVILGHGLWKINDHRRRLRQRIP 272
KKIYSPLLEGLL LYLGFEWIQTNN+LAPIITHGIYS V+LG+GLWK++ H++RLR R+
Sbjct: 352 KKIYSPLLEGLLGLYLGFEWIQTNNLLAPIITHGIYSAVVLGNGLWKLHHHQQRLRLRVQ 411
Query: 271 QLKSEEPNS 245
+L++E N+
Sbjct: 412 KLETEGDNN 420
>ref|NP_565802.1| expressed protein; protein id: At2g35260.1, supported by cDNA:
gi_13605586, supported by cDNA: gi_19548074 [Arabidopsis
thaliana] gi|25342057|pir||D84766 hypothetical protein
At2g35260 [imported] - Arabidopsis thaliana
gi|3668080|gb|AAC61812.1| expressed protein [Arabidopsis
thaliana] gi|13605587|gb|AAK32787.1|AF361619_1
At2g35260/T4C15.7 [Arabidopsis thaliana]
gi|19548075|gb|AAL87402.1| At2g35260/T4C15.7
[Arabidopsis thaliana]
Length = 382
Score = 208 bits (529), Expect = 5e-53
Identities = 100/125 (80%), Positives = 113/125 (90%)
Frame = -3
Query: 631 FVPFAQAFAAVLTAVLTGSLYYVAASPKDPTYIVAPVLQSRSGRQDLKKLFEAWYEKRQM 452
FVPFA+ FAAV+TA LTGSLY++AASPKDPTYIVAPVL+SR R D KKL AWYEKRQM
Sbjct: 254 FVPFAEVFAAVITATLTGSLYFLAASPKDPTYIVAPVLRSR--RDDFKKLLSAWYEKRQM 311
Query: 451 KKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSTVILGHGLWKINDHRRRLRQRIP 272
KKIYSPLLEGLLALYLG EW+QT+NILAP++THGIYS VILGHGLWKI+DHRRRLR+RI
Sbjct: 312 KKIYSPLLEGLLALYLGIEWVQTDNILAPMMTHGIYSAVILGHGLWKIHDHRRRLRRRIE 371
Query: 271 QLKSE 257
++SE
Sbjct: 372 HIRSE 376
>pir||T05070 hypothetical protein T6K21.20 - Arabidopsis thaliana
gi|2894593|emb|CAA17127.1| hypothetical protein
[Arabidopsis thaliana] gi|7268536|emb|CAB78786.1|
hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 195 bits (495), Expect = 5e-49
Identities = 97/156 (62%), Positives = 116/156 (74%), Gaps = 27/156 (17%)
Frame = -3
Query: 631 FVPFAQAFAAVLTAVLTGSLYYVAASPKDPTYIVAPVLQSRSGRQDLKKLFEAWYEKRQM 452
FVPFAQ FAA +TA LTGSLYY+AASPKDPTYI+APVL++RS R +LKKLF AWYE+RQM
Sbjct: 290 FVPFAQVFAATITAALTGSLYYIAASPKDPTYIMAPVLKTRSARDELKKLFAAWYERRQM 349
Query: 451 KKIYSPLLEGLLALYLGFEWI---------------------------QTNNILAPIITH 353
KKIYSPLLEGLL LYLGFEWI QTNN+LAPIITH
Sbjct: 350 KKIYSPLLEGLLGLYLGFEWIQVFTSSVHAFLFSTCRSKIVDTKLKILQTNNLLAPIITH 409
Query: 352 GIYSTVILGHGLWKINDHRRRLRQRIPQLKSEEPNS 245
GIYS V+LG+GLWK++ H++RLR R+ +L++E N+
Sbjct: 410 GIYSAVVLGNGLWKLHHHQQRLRLRVQKLETEGDNN 445
>ref|NP_280685.1| Vng1993h [Halobacterium sp. NRC-1] gi|25410432|pir||A84350
hypothetical protein Vng1993h [imported] - Halobacterium
sp. NRC-1 gi|10581426|gb|AAG20165.1| Vng1993h
[Halobacterium sp. NRC-1]
Length = 349
Score = 38.5 bits (88), Expect = 0.074
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = -3
Query: 421 LLALYLGFEWIQTNNILAPIITHGIYSTVILGHGLWK 311
+++L LG + +T+N+LAPI+ HG+Y V G W+
Sbjct: 311 VVSLVLGVAYERTDNLLAPIVIHGVYDAVQFGLAYWQ 347
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,788,560
Number of Sequences: 1393205
Number of extensions: 12446591
Number of successful extensions: 31321
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31266
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
