Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003788A_C01 KMC003788A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199429.1| putative protein; protein id: At5g46170.1, supp... 70 2e-11
ref|NP_193573.1| hypothetical protein; protein id: At4g18380.1 [... 64 1e-09
ref|NP_564350.1| expressed protein; protein id: At1g30200.1, sup... 61 1e-08
dbj|BAB56069.1| P0665A11.15 [Oryza sativa (japonica cultivar-gro... 54 2e-06
dbj|BAB85245.1| P0425G02.20 [Oryza sativa (japonica cultivar-gro... 41 0.016
>ref|NP_199429.1| putative protein; protein id: At5g46170.1, supported by cDNA:
gi_17979206 [Arabidopsis thaliana]
gi|9757737|dbj|BAB08262.1|
gene_id:MCL19.23~pir||T04534~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|17979207|gb|AAL49842.1| unknown protein [Arabidopsis
thaliana] gi|23296883|gb|AAN13195.1| unknown protein
[Arabidopsis thaliana]
Length = 395
Score = 70.5 bits (171), Expect = 2e-11
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = -2
Query: 649 KEASDLSWVSTAFEEPYRTAAPMLVKRRTYCLEMNSF 539
KE SD+SWVS+AFEEPY TAA MLVKRRTYCLEMNSF
Sbjct: 359 KEVSDISWVSSAFEEPYETAAKMLVKRRTYCLEMNSF 395
>ref|NP_193573.1| hypothetical protein; protein id: At4g18380.1 [Arabidopsis
thaliana] gi|7486303|pir||T04534 hypothetical protein
F28J12.40 - Arabidopsis thaliana
gi|2832643|emb|CAA16718.1| hypothetical protein
[Arabidopsis thaliana] gi|7268631|emb|CAB78840.1|
hypothetical protein [Arabidopsis thaliana]
Length = 380
Score = 64.3 bits (155), Expect = 1e-09
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = -2
Query: 649 KEASDLSWVSTAFEEPYRTAAPMLVKRRTYCLEMNSF 539
KE D+SWVS+AF+EPY AA MLVKRRTYCLEMNSF
Sbjct: 344 KEVCDVSWVSSAFDEPYGVAAKMLVKRRTYCLEMNSF 380
>ref|NP_564350.1| expressed protein; protein id: At1g30200.1, supported by cDNA:
gi_14335117, supported by cDNA: gi_16604496 [Arabidopsis
thaliana] gi|25341962|pir||B86426 41.8K hypothetical
protein - Arabidopsis thaliana
gi|12320858|gb|AAG50568.1|AC073506_10 hypothetical
protein [Arabidopsis thaliana]
gi|12321627|gb|AAG50853.1|AC074176_2 hypothetical
protein [Arabidopsis thaliana]
gi|14335118|gb|AAK59838.1| At1g30200/F12P21_1
[Arabidopsis thaliana] gi|16604497|gb|AAL24254.1|
At1g30200/F12P21_1 [Arabidopsis thaliana]
gi|23308205|gb|AAN18072.1| At1g30200/F12P21_1
[Arabidopsis thaliana]
Length = 379
Score = 61.2 bits (147), Expect = 1e-08
Identities = 27/37 (72%), Positives = 30/37 (80%)
Frame = -2
Query: 649 KEASDLSWVSTAFEEPYRTAAPMLVKRRTYCLEMNSF 539
KE D SW+S AFEEP+ T A ML+KRRTYCLEMNSF
Sbjct: 343 KEVCDASWLSDAFEEPFGTVAKMLIKRRTYCLEMNSF 379
>dbj|BAB56069.1| P0665A11.15 [Oryza sativa (japonica cultivar-group)]
Length = 396
Score = 53.9 bits (128), Expect = 2e-06
Identities = 24/31 (77%), Positives = 27/31 (86%)
Frame = -2
Query: 631 SWVSTAFEEPYRTAAPMLVKRRTYCLEMNSF 539
SW+ AFEEPYRTAA +L+KRRTY LEMNSF
Sbjct: 366 SWILDAFEEPYRTAAQVLLKRRTYSLEMNSF 396
>dbj|BAB85245.1| P0425G02.20 [Oryza sativa (japonica cultivar-group)]
gi|20161462|dbj|BAB90386.1| P0432B10.4 [Oryza sativa
(japonica cultivar-group)]
Length = 451
Score = 40.8 bits (94), Expect = 0.016
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -2
Query: 631 SWVSTAFEEPYRTAAPMLVKRRTYCLEMN 545
++VS+AF+EP+R A L+KRRTY LEMN
Sbjct: 415 AFVSSAFDEPFRFAVKALMKRRTYLLEMN 443
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,035,740
Number of Sequences: 1393205
Number of extensions: 10726236
Number of successful extensions: 22465
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22429
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
