Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003781A_C01 KMC003781A_c01
(1090 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC45211.1| OJ1340_C08.26 [Oryza sativa (japonica cultivar-g... 328 7e-89
ref|NP_564721.1| expressed protein; protein id: At1g56700.1, sup... 315 8e-85
gb|AAG46136.1|AC082644_18 putative pyrrolidone carboxyl peptidas... 304 1e-81
gb|AAK25976.1|AF360266_1 unknown protein [Arabidopsis thaliana] ... 290 4e-77
ref|NP_173758.1| hypothetical protein; protein id: At1g23440.1 [... 194 2e-48
>dbj|BAC45211.1| OJ1340_C08.26 [Oryza sativa (japonica cultivar-group)]
Length = 216
Score = 328 bits (842), Expect = 7e-89
Identities = 165/219 (75%), Positives = 189/219 (85%)
Frame = -2
Query: 939 MGSEGPAAAAVTTVHVTGFKKFHGVSENPTEAIVRNLTEYMNKKGLPKGLVIGSCTILET 760
MGSEGP+ V TVHVTGFKKFHGV+ENPTE IV NL ++ KKGLPK LV+GSCT+LET
Sbjct: 1 MGSEGPS---VVTVHVTGFKKFHGVAENPTEKIVGNLKSFVEKKGLPKNLVLGSCTVLET 57
Query: 759 AGQGALVPLYQTLQSAITAAKESESSSSNRVIWLHFGVNSGATKFAIERQAVNEATFRCP 580
AGQGAL LY+ L+SAI A +E+ SS+ ++ HFGVNSGAT+FA+E QAVNEATFRCP
Sbjct: 58 AGQGALGTLYKVLESAI-AERENGSSAQGQI---HFGVNSGATRFALENQAVNEATFRCP 113
Query: 579 DEMGWKPQKVPIVPSDGAISRTRETTLPVEEITQALAKKGYNVMTSDDAGRFVCHYVYYH 400
DE+GWKPQ+VPIVPSDGAISRTRETTLPV E+T++L K GY+VM SDDAGRFVC+YVYYH
Sbjct: 114 DELGWKPQRVPIVPSDGAISRTRETTLPVNELTKSLRKTGYDVMPSDDAGRFVCNYVYYH 173
Query: 399 SLRFAEQNGIKSLFVHVPLFFTIDEEVQMQFAASLLDLL 283
SLRFAEQ+GIKSLFVHVPLF TIDEEVQM F ASLL+ L
Sbjct: 174 SLRFAEQHGIKSLFVHVPLFLTIDEEVQMHFVASLLEAL 212
>ref|NP_564721.1| expressed protein; protein id: At1g56700.1, supported by cDNA:
21415. [Arabidopsis thaliana] gi|25345286|pir||H96608
hypothetical protein F25P12.86 [imported] - Arabidopsis
thaliana gi|9954743|gb|AAG09094.1|AC009323_5 Unknown
protein [Arabidopsis thaliana]
gi|21554239|gb|AAM63314.1| putative pyrrolidone carboxyl
peptidase [Arabidopsis thaliana]
gi|29028828|gb|AAO64793.1| At1g56700 [Arabidopsis
thaliana]
Length = 219
Score = 315 bits (807), Expect = 8e-85
Identities = 155/223 (69%), Positives = 181/223 (80%)
Frame = -2
Query: 939 MGSEGPAAAAVTTVHVTGFKKFHGVSENPTEAIVRNLTEYMNKKGLPKGLVIGSCTILET 760
MGSEGP T+H+TGFKKFHGV+ENPTE + NL EY+ K + K + +GSCT+LET
Sbjct: 1 MGSEGPTGV---TIHITGFKKFHGVAENPTEKMANNLKEYLAKNCVSKDVNLGSCTVLET 57
Query: 759 AGQGALVPLYQTLQSAITAAKESESSSSNRVIWLHFGVNSGATKFAIERQAVNEATFRCP 580
AGQGAL LYQ LQSA+ KESES + + IW+HFGVNSGATKFAIE+QAVNEATFRCP
Sbjct: 58 AGQGALASLYQLLQSAVNT-KESESLTG-KTIWVHFGVNSGATKFAIEQQAVNEATFRCP 115
Query: 579 DEMGWKPQKVPIVPSDGAISRTRETTLPVEEITQALAKKGYNVMTSDDAGRFVCHYVYYH 400
DE+GWKPQ +PIVPSDG IS R+T LPVEEIT+AL K G+ V+TSDDAGRFVC+YVYYH
Sbjct: 116 DELGWKPQNLPIVPSDGPISTVRKTNLPVEEITKALEKNGFEVITSDDAGRFVCNYVYYH 175
Query: 399 SLRFAEQNGIKSLFVHVPLFFTIDEEVQMQFAASLLDLLPSIC 271
SLRFAEQN +SLFVHVPLF +DEE QM+F SLL++L SIC
Sbjct: 176 SLRFAEQNKTRSLFVHVPLFVAVDEETQMRFTVSLLEVLASIC 218
>gb|AAG46136.1|AC082644_18 putative pyrrolidone carboxyl peptidase [Oryza sativa]
Length = 222
Score = 304 bits (779), Expect = 1e-81
Identities = 149/221 (67%), Positives = 177/221 (79%)
Frame = -2
Query: 939 MGSEGPAAAAVTTVHVTGFKKFHGVSENPTEAIVRNLTEYMNKKGLPKGLVIGSCTILET 760
MGSEGP+ TVHVTGFKKFHGV+ENPTE IVRNL +M K+GLPKGL +GSCT+LET
Sbjct: 1 MGSEGPSGV---TVHVTGFKKFHGVAENPTEKIVRNLESFMEKRGLPKGLTLGSCTVLET 57
Query: 759 AGQGALVPLYQTLQSAITAAKESESSSSNRVIWLHFGVNSGATKFAIERQAVNEATFRCP 580
AGQG L PLY+ +SAI KE + +VI LHFGVNSG T+FA+E QA+NEATFRCP
Sbjct: 58 AGQGGLGPLYEVFESAIVD-KEYGLNDQGQVILLHFGVNSGTTRFALENQAINEATFRCP 116
Query: 579 DEMGWKPQKVPIVPSDGAISRTRETTLPVEEITQALAKKGYNVMTSDDAGRFVCHYVYYH 400
DE+GWKPQ+ PIV SDG+IS R+TT+PV E+ ++L + G++V SDDAGRFVC+YVYY
Sbjct: 117 DELGWKPQRAPIVSSDGSISNLRKTTVPVNEVNKSLQQMGFDVAPSDDAGRFVCNYVYYQ 176
Query: 399 SLRFAEQNGIKSLFVHVPLFFTIDEEVQMQFAASLLDLLPS 277
SLRFAEQ GIKSLFVH PLF TI EEVQM F A+LL++L S
Sbjct: 177 SLRFAEQRGIKSLFVHFPLFTTISEEVQMNFVATLLEVLAS 217
>gb|AAK25976.1|AF360266_1 unknown protein [Arabidopsis thaliana] gi|22136908|gb|AAM91798.1|
unknown protein [Arabidopsis thaliana]
Length = 217
Score = 290 bits (741), Expect = 4e-77
Identities = 140/223 (62%), Positives = 172/223 (76%)
Frame = -2
Query: 939 MGSEGPAAAAVTTVHVTGFKKFHGVSENPTEAIVRNLTEYMNKKGLPKGLVIGSCTILET 760
MGSEGP A T+HVTGFKKF GVSENPTE I L Y+ K+GLP GL +GSC++L+T
Sbjct: 1 MGSEGPKAI---TIHVTGFKKFLGVSENPTEKIANGLKSYVEKRGLPSGLCLGSCSVLDT 57
Query: 759 AGQGALVPLYQTLQSAITAAKESESSSSNRVIWLHFGVNSGATKFAIERQAVNEATFRCP 580
AG+GA LY+ L+S++ + + +++ V+WLH GVNSGATKFAIERQAVNEA FRCP
Sbjct: 58 AGEGAKSKLYEVLESSVVSG---DKNNNGTVVWLHLGVNSGATKFAIERQAVNEAHFRCP 114
Query: 579 DEMGWKPQKVPIVPSDGAISRTRETTLPVEEITQALAKKGYNVMTSDDAGRFVCHYVYYH 400
DE+GW+PQ++PIV DG IS+ +ET+ E I Q L KKG+ V+ SDDAGRFVC+YVYYH
Sbjct: 115 DELGWQPQRLPIVVEDGGISKAKETSCSTESIFQLLKKKGFEVVQSDDAGRFVCNYVYYH 174
Query: 399 SLRFAEQNGIKSLFVHVPLFFTIDEEVQMQFAASLLDLLPSIC 271
SLRFAEQ G KSLFVHVPLF IDE+ QMQF ASLL+ + + C
Sbjct: 175 SLRFAEQKGHKSLFVHVPLFSKIDEDTQMQFVASLLEAIAATC 217
>ref|NP_173758.1| hypothetical protein; protein id: At1g23440.1 [Arabidopsis
thaliana]
Length = 306
Score = 194 bits (494), Expect = 2e-48
Identities = 95/148 (64%), Positives = 112/148 (75%), Gaps = 3/148 (2%)
Frame = -2
Query: 705 AAKESESSSSNRVIWL---HFGVNSGATKFAIERQAVNEATFRCPDEMGWKPQKVPIVPS 535
+A+ E + WL H GVNSGATKFAIERQAVNEA FRCPDE+GW+PQ++PIV
Sbjct: 159 SARGPEKLHEDHCAWLWTLHLGVNSGATKFAIERQAVNEAHFRCPDELGWQPQRLPIVVE 218
Query: 534 DGAISRTRETTLPVEEITQALAKKGYNVMTSDDAGRFVCHYVYYHSLRFAEQNGIKSLFV 355
DG IS+ +ET+ E I Q L KKG+ V+ SDDAGRFVC+YVYYHSLRFAEQ G KSLFV
Sbjct: 219 DGGISKAKETSCSTESIFQLLKKKGFEVVQSDDAGRFVCNYVYYHSLRFAEQKGHKSLFV 278
Query: 354 HVPLFFTIDEEVQMQFAASLLDLLPSIC 271
HVPLF IDE+ QMQF ASLL+ + + C
Sbjct: 279 HVPLFSKIDEDTQMQFVASLLEAIAATC 306
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 965,900,520
Number of Sequences: 1393205
Number of extensions: 22014178
Number of successful extensions: 58668
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 54661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58560
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 65065653414
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
