Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003779A_C01 KMC003779A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42655.1| unknown protein [Arabidopsis thaliana] 199 3e-50
dbj|BAC43193.1| unknown protein [Arabidopsis thaliana] 191 1e-47
emb|CAC81898.1| NEP1-interacting protein 2 [Arabidopsis thaliana] 191 1e-47
emb|CAC81897.1| NEP1-interacting protein [Arabidopsis thaliana] 190 1e-47
pir||T08862 hypothetical protein A_TM017A05.9 - Arabidopsis thal... 180 2e-44
>dbj|BAC42655.1| unknown protein [Arabidopsis thaliana]
Length = 236
Score = 199 bits (506), Expect = 3e-50
Identities = 94/115 (81%), Positives = 104/115 (89%)
Frame = -3
Query: 712 LVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGCGGAKGLSGDSVEKIPKIKITTDNN 533
LVRERIGPAMLSAVQSQMGAV++ F+E+ +IFDTG G+KGL+GD V+KIPKIKIT NN
Sbjct: 124 LVRERIGPAMLSAVQSQMGAVDSTFEELSSIFDTG--GSKGLTGDLVDKIPKIKITGKNN 181
Query: 532 ADASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 368
DASG + SCSVCLQDFQLGETVRSLPHCHHMFHLPCID WLFRHGSCP+CRRDL
Sbjct: 182 LDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236
>dbj|BAC43193.1| unknown protein [Arabidopsis thaliana]
Length = 241
Score = 191 bits (484), Expect = 1e-47
Identities = 90/115 (78%), Positives = 100/115 (86%)
Frame = -3
Query: 712 LVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGCGGAKGLSGDSVEKIPKIKITTDNN 533
LVRERIGPAMLSAVQSQMGAV+T FD+ ++FDTG G+KGL+GD VEKIPK+ IT +NN
Sbjct: 129 LVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTG--GSKGLTGDLVEKIPKMTITGNNN 186
Query: 532 ADASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 368
DAS SCSVCLQDFQLGETVRSLPHCHHMFHLPCID WL RHGSCP+CRRD+
Sbjct: 187 TDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241
>emb|CAC81898.1| NEP1-interacting protein 2 [Arabidopsis thaliana]
Length = 241
Score = 191 bits (484), Expect = 1e-47
Identities = 90/115 (78%), Positives = 100/115 (86%)
Frame = -3
Query: 712 LVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGCGGAKGLSGDSVEKIPKIKITTDNN 533
LVRERIGPAMLSAVQSQMGAV+T FD+ ++FDTG G+KGL+GD VEKIPK+ IT +NN
Sbjct: 129 LVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTG--GSKGLTGDLVEKIPKMTITGNNN 186
Query: 532 ADASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 368
DAS SCSVCLQDFQLGETVRSLPHCHHMFHLPCID WL RHGSCP+CRRD+
Sbjct: 187 TDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241
>emb|CAC81897.1| NEP1-interacting protein [Arabidopsis thaliana]
Length = 236
Score = 190 bits (483), Expect = 1e-47
Identities = 91/115 (79%), Positives = 101/115 (87%)
Frame = -3
Query: 712 LVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGCGGAKGLSGDSVEKIPKIKITTDNN 533
LVRERIGPAMLSAVQSQMGAV++ F+E+ +IFDTG G+KGL+GD V+KIPKIKIT NN
Sbjct: 124 LVRERIGPAMLSAVQSQMGAVDSTFEELSSIFDTG--GSKGLTGDLVDKIPKIKITGKNN 181
Query: 532 ADASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 368
DA G + SCS CLQDFQLGETVRSLPHCH MFHLPCID WLFRHGSCP+CRRDL
Sbjct: 182 LDAFGNKDSCSGCLQDFQLGETVRSLPHCHPMFHLPCIDNWLFRHGSCPMCRRDL 236
>pir||T08862 hypothetical protein A_TM017A05.9 - Arabidopsis thaliana
Length = 292
Score = 180 bits (457), Expect = 2e-44
Identities = 86/110 (78%), Positives = 95/110 (86%)
Frame = -3
Query: 712 LVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGCGGAKGLSGDSVEKIPKIKITTDNN 533
LVRERIGPAMLSAVQSQMGAV+T FD+ ++FDTG G+KGL+GD VEKIPK+ IT +NN
Sbjct: 142 LVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTG--GSKGLTGDLVEKIPKMTITGNNN 199
Query: 532 ADASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPL 383
DAS SCSVCLQDFQLGETVRSLPHCHHMFHLPCID WL RHGSCP+
Sbjct: 200 TDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPI 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,633,882
Number of Sequences: 1393205
Number of extensions: 10968555
Number of successful extensions: 26931
Number of sequences better than 10.0: 1135
Number of HSP's better than 10.0 without gapping: 25736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26622
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
