Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003767A_C01 KMC003767A_c01
(675 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64928.1| galactose-1-phosphate uridyl transferase-like pro... 189 3e-47
ref|NP_197321.1| galactose-1-phosphate uridyl transferase-like p... 187 1e-46
ref|NP_228704.1| galactose-1-phosphate uridylyltransferase, puta... 122 6e-27
ref|NP_621965.1| Galactose-1-phosphate uridylyltransferase [Ther... 100 2e-20
gb|ZP_00082305.1| hypothetical protein [Geobacter metallireducens] 94 2e-18
>gb|AAM64928.1| galactose-1-phosphate uridyl transferase-like protein [Arabidopsis
thaliana]
Length = 351
Score = 189 bits (480), Expect = 3e-47
Identities = 84/125 (67%), Positives = 107/125 (85%)
Frame = -3
Query: 670 LIDSSTYFLSLVPFAAAFPFEIWIVPRYHSAHFHELDAEKAVDLGGLLKQTLRKMSVQLN 491
+ID S++F+S+ PFAA +PFEIWI+P+ HS+HFH LD KAVDLGGLLK L+K++ QLN
Sbjct: 227 VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLN 286
Query: 490 NPPFNFMIHTSPLHDHGSELAYSHWFIQIVPQLIGIAGFEIGTGCYINPVFPEDAAKVLR 311
+PP+N+MIHTSPL S+L Y+HWF+QIVPQL G+ GFEIGTGCYINPVFPED AKV+R
Sbjct: 287 DPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIGTGCYINPVFPEDVAKVMR 346
Query: 310 DVNVS 296
+VN++
Sbjct: 347 EVNLT 351
>ref|NP_197321.1| galactose-1-phosphate uridyl transferase-like protein; protein id:
At5g18200.1, supported by cDNA: 34699. [Arabidopsis
thaliana] gi|9758902|dbj|BAB09478.1|
galactose-1-phosphate uridyl transferase-like protein
[Arabidopsis thaliana] gi|28973757|gb|AAO64194.1|
putative galactose-1-phosphate uridyl transferase
[Arabidopsis thaliana]
Length = 351
Score = 187 bits (475), Expect = 1e-46
Identities = 83/125 (66%), Positives = 107/125 (85%)
Frame = -3
Query: 670 LIDSSTYFLSLVPFAAAFPFEIWIVPRYHSAHFHELDAEKAVDLGGLLKQTLRKMSVQLN 491
+ID S++F+S+ PFAA +PFEIWI+P+ HS+HFH LD KAVDLGGLLK L+K++ QLN
Sbjct: 227 VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLN 286
Query: 490 NPPFNFMIHTSPLHDHGSELAYSHWFIQIVPQLIGIAGFEIGTGCYINPVFPEDAAKVLR 311
+PP+N+MIHTSPL S+L Y+HWF+QIVPQL G+ GFEIGTGCYINPVFPED AKV+R
Sbjct: 287 DPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIGTGCYINPVFPEDVAKVMR 346
Query: 310 DVNVS 296
+V+++
Sbjct: 347 EVSLT 351
>ref|NP_228704.1| galactose-1-phosphate uridylyltransferase, putative [Thermotoga
maritima] gi|7434860|pir||A72322 hypothetical protein
TM0896 - Thermotoga maritima (strain MSB8)
gi|4981431|gb|AAD35977.1|AE001754_14
galactose-1-phosphate uridylyltransferase, putative
[Thermotoga maritima]
Length = 336
Score = 122 bits (305), Expect = 6e-27
Identities = 56/126 (44%), Positives = 84/126 (66%)
Frame = -3
Query: 670 LIDSSTYFLSLVPFAAAFPFEIWIVPRYHSAHFHELDAEKAVDLGGLLKQTLRKMSVQLN 491
+++ + +F++L PFAA FPFE WI+P+ H FH + ++ L +LK L ++ L+
Sbjct: 212 IVEENDHFIALEPFAARFPFETWILPKRHMNSFHLISEDEVGSLAKILKNVLYRIYAALD 271
Query: 490 NPPFNFMIHTSPLHDHGSELAYSHWFIQIVPQLIGIAGFEIGTGCYINPVFPEDAAKVLR 311
NPP+N +IHT+P G + Y HW I+I P+L +AGFE GTG YIN V PEDAA+ LR
Sbjct: 272 NPPYNLLIHTAPTSLEGKD--YYHWHIEIFPRLTKVAGFEWGTGFYINTVPPEDAARYLR 329
Query: 310 DVNVSK 293
+V++ +
Sbjct: 330 EVSLEQ 335
>ref|NP_621965.1| Galactose-1-phosphate uridylyltransferase [Thermoanaerobacter
tengcongensis] gi|20515257|gb|AAM23569.1|
Galactose-1-phosphate uridylyltransferase
[Thermoanaerobacter tengcongensis]
Length = 325
Score = 100 bits (249), Expect = 2e-20
Identities = 47/124 (37%), Positives = 73/124 (57%)
Frame = -3
Query: 670 LIDSSTYFLSLVPFAAAFPFEIWIVPRYHSAHFHELDAEKAVDLGGLLKQTLRKMSVQLN 491
LI + F+++ P+A+ +P+E WI+P+ H F E+D + +LK + K +
Sbjct: 206 LIGENEKFVAIAPYASQYPYESWIIPKEHQEKFEEIDEDSLSKFVEILKPLIEKYEKEFE 265
Query: 490 NPPFNFMIHTSPLHDHGSELAYSHWFIQIVPQLIGIAGFEIGTGCYINPVFPEDAAKVLR 311
PP+N ++HT P D + HW I+I P+L AGFE+GTG +INPV PE AA +L+
Sbjct: 266 MPPYNIVLHTLPPRD----IRNYHWHIEIAPRLTIAAGFELGTGVHINPVSPELAASILK 321
Query: 310 DVNV 299
N+
Sbjct: 322 LQNL 325
>gb|ZP_00082305.1| hypothetical protein [Geobacter metallireducens]
Length = 359
Score = 93.6 bits (231), Expect = 2e-18
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Frame = -3
Query: 649 FLSLVPFAAAFPFEIWIVPRYHSAHFHELDAEKAVDLGGLLKQTLRKMSVQLNNPPFNFM 470
++ + P+A+ FPFE+ + P+ HS F + +L LK L ++ L +PP+NF+
Sbjct: 235 YVIMTPYASCFPFELRLYPKRHSHDFALSTDGELAELAVALKDMLGRLKSVLKDPPYNFI 294
Query: 469 IHTSP-------LHDHGSELAYS-HWFIQIVPQLIGIAGFEIGTGCYINPVFPEDAAKVL 314
+HT+P + S + Y HW I++VP+L IAGFE GTG YINP PEDAA L
Sbjct: 295 LHTAPPPQPRLGKPEFWSSIEYDYHWHIELVPRLTPIAGFEWGTGFYINPTSPEDAATFL 354
Query: 313 R 311
R
Sbjct: 355 R 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,041,298
Number of Sequences: 1393205
Number of extensions: 11845199
Number of successful extensions: 26869
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 25326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26772
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
