Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003766A_C02 KMC003766A_c02
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198235.1| putative protein; protein id: At5g28830.1 [Arab... 78 9e-14
gb|AAL77132.1|AC098566_19 Putative calcium-binding protein [Oryz... 47 2e-04
pir||T07107 probable calcium-binding protein (clone Y8) - potato... 47 2e-04
gb|AAM20613.1| EF-Hand containing protein-like [Arabidopsis thal... 40 0.027
ref|NP_195592.1| EF-Hand containing protein -like; protein id: A... 40 0.027
>ref|NP_198235.1| putative protein; protein id: At5g28830.1 [Arabidopsis thaliana]
Length = 324
Score = 77.8 bits (190), Expect = 9e-14
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 VVQNIRIINGSKLRQLLANEPELNSIVERALQEKPEPADGLGSTETIIRGFLEKNAKELG 388
+V N+ I GS++R++LA+E L +VE+ + E+ + G T+I KN KELG
Sbjct: 209 IVLNVEIFTGSRIRKILADEKTLKCLVEKTILEESNGKESQGWLRTLII----KNGKELG 264
Query: 387 LP-LSEADSAVALLYDTVFADVVKEKDGEGLDKEELAKLMKDVLEKFAEQLEFNPVY 220
LP LS + VALLY+T+ + + +++ KEE +KD+L+KF E LE PV+
Sbjct: 265 LPPLSSENEQVALLYETIISQLNNKENAS--TKEEFMDALKDILKKFEELLETTPVF 319
>gb|AAL77132.1|AC098566_19 Putative calcium-binding protein [Oryza sativa]
Length = 417
Score = 47.0 bits (110), Expect = 2e-04
Identities = 30/116 (25%), Positives = 60/116 (50%)
Frame = -3
Query: 570 VVVQNIRIINGSKLRQLLANEPELNSIVERALQEKPEPADGLGSTETIIRGFLEKNAKEL 391
+V +G+ +++LL+N+ EL+ +++ + P+ D + + IR ++ A +
Sbjct: 272 IVAHTENTFDGNGIKKLLSNKLELDKLLDCVWRGVPKEKDR--TAKQYIRVAFDRMADSI 329
Query: 390 GLPLSEADSAVALLYDTVFADVVKEKDGEGLDKEELAKLMKDVLEKFAEQLEFNPV 223
LP A V + D F + K +DG+ +D+ E KL+ ++L QL+ NP+
Sbjct: 330 NLPPYGAVEQVDAVVDEAFK-MAKAEDGKAVDETEFKKLLTEILGAVMLQLDGNPI 384
>pir||T07107 probable calcium-binding protein (clone Y8) - potato
gi|3550661|emb|CAA04670.1| 39 kDa EF-Hand containing
protein [Solanum tuberosum]
Length = 355
Score = 47.0 bits (110), Expect = 2e-04
Identities = 38/119 (31%), Positives = 60/119 (49%), Gaps = 3/119 (2%)
Frame = -3
Query: 570 VVVQNIRIINGSKLRQLLANEPELNSIVERALQEKPEPADGLGSTETIIRGFLEKNAKEL 391
+V + +GS +++LL+N+ EL+ ++ AL+ P G S E +R L+ A
Sbjct: 215 IVAHSENTFDGSGIKRLLSNKFELDKTLDSALKTIPRDRHGKMSKE-YLRVALDVLAPSA 273
Query: 390 GLPLSEADSAVALLYDTVFADVVK---EKDGEGLDKEELAKLMKDVLEKFAEQLEFNPV 223
GLP A + D V +V K DG+ + +EE KL+ ++L QLE NPV
Sbjct: 274 GLPPIGAVDQM----DKVIQEVCKMLDADDGKMVKEEEFKKLLTEILGSMMLQLEGNPV 328
>gb|AAM20613.1| EF-Hand containing protein-like [Arabidopsis thaliana]
gi|22136428|gb|AAM91292.1| EF-hand containing
protein-like [Arabidopsis thaliana]
Length = 265
Score = 39.7 bits (91), Expect = 0.027
Identities = 32/120 (26%), Positives = 57/120 (46%), Gaps = 4/120 (3%)
Frame = -3
Query: 570 VVVQNIRIINGSKLRQLLANEPELNSIVERALQEKPEPADGLGSTETIIRGFLEKNAKEL 391
+V + +GS +R+LL+N+ E + + A++ P+ G S + +R L+ A
Sbjct: 122 IVAHSENTFDGSGIRRLLSNKFEFDKALNVAMETIPKDRQGKVS-KGYLRAVLDTVAPSA 180
Query: 390 GLP----LSEADSAVALLYDTVFADVVKEKDGEGLDKEELAKLMKDVLEKFAEQLEFNPV 223
LP +S+ D+ + V D DG + +EE K M ++L QLE +P+
Sbjct: 181 TLPPIGAVSQMDNMIMEALKMVNGD-----DGNVVKEEEFKKTMAEILGSIMLQLEGSPI 235
>ref|NP_195592.1| EF-Hand containing protein -like; protein id: At4g38810.1,
supported by cDNA: gi_15810420 [Arabidopsis thaliana]
gi|7488068|pir||T06080 probable calcium-binding protein
T9A14.90 - Arabidopsis thaliana
gi|4490333|emb|CAB38615.1| EF-Hand containing
protein-like [Arabidopsis thaliana]
gi|7270864|emb|CAB80544.1| EF-Hand containing
protein-like [Arabidopsis thaliana]
gi|15810421|gb|AAL07098.1| putative EF-hand containing
protein [Arabidopsis thaliana]
Length = 375
Score = 39.7 bits (91), Expect = 0.027
Identities = 32/120 (26%), Positives = 57/120 (46%), Gaps = 4/120 (3%)
Frame = -3
Query: 570 VVVQNIRIINGSKLRQLLANEPELNSIVERALQEKPEPADGLGSTETIIRGFLEKNAKEL 391
+V + +GS +R+LL+N+ E + + A++ P+ G S + +R L+ A
Sbjct: 232 IVAHSENTFDGSGIRRLLSNKFEFDKALNVAMETIPKDRQGKVS-KGYLRAVLDTVAPSA 290
Query: 390 GLP----LSEADSAVALLYDTVFADVVKEKDGEGLDKEELAKLMKDVLEKFAEQLEFNPV 223
LP +S+ D+ + V D DG + +EE K M ++L QLE +P+
Sbjct: 291 TLPPIGAVSQMDNMIMEALKMVNGD-----DGNVVKEEEFKKTMAEILGSIMLQLEGSPI 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,786,530
Number of Sequences: 1393205
Number of extensions: 10264638
Number of successful extensions: 27692
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 26616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27653
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
