Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003763A_C01 KMC003763A_c01
(372 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_150114.1| ribosomal protein S3 [Schizophyllum commune] gi... 31 3.4
pir||JN0559 repA protein - Campylobacter hyointestinalis plasmid... 31 4.4
ref|NP_182147.1| hypothetical protein; protein id: At2g46240.1 [... 30 5.8
ref|NP_682195.1| cation efflux system protein [Thermosynechococc... 30 9.9
ref|NP_712755.1| Methyl-accepting chemotaxis protein tlpA [Lepto... 30 9.9
>ref|NP_150114.1| ribosomal protein S3 [Schizophyllum commune]
gi|9966502|gb|AAG10295.1|AF275272_1 ribosomal protein S3
[Schizophyllum commune]
Length = 1453
Score = 31.2 bits (69), Expect = 3.4
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +2
Query: 122 TLIHLNSQQTTISYTTSNMK*KDNEIPYKNPSRQRIQHT*TLFVSSYFSIQSPSFL*KLI 301
T + +NS+ + +K E+ Y N +++ + + F+S +F+ ++ + KLI
Sbjct: 1133 TALQINSEDNNYAILYDYLK----EMSYYNMNQKGVIFSFNKFISFFFNTRNTNKNNKLI 1188
Query: 302 KFL------SFDPMFGCCLVSQ 349
K+L SF PMF CL+S+
Sbjct: 1189 KYLYDLLAQSFRPMF--CLISK 1208
>pir||JN0559 repA protein - Campylobacter hyointestinalis plasmid
gi|144210|gb|AAA23031.1| replicase
Length = 337
Score = 30.8 bits (68), Expect = 4.4
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = -3
Query: 358 CLKLRNQATAKHRIKRKKFYELLEKTRRLNAEVTRNK 248
C++++NQAT K + K YE+L+ L R K
Sbjct: 154 CMQMQNQATKKRTFELSKLYEILQLPESLTTSFARFK 190
>ref|NP_182147.1| hypothetical protein; protein id: At2g46240.1 [Arabidopsis
thaliana] gi|25408978|pir||D84900 hypothetical protein
At2g46240 [imported] - Arabidopsis thaliana
gi|3702325|gb|AAC62882.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1043
Score = 30.4 bits (67), Expect = 5.8
Identities = 16/48 (33%), Positives = 24/48 (49%)
Frame = -3
Query: 352 KLRNQATAKHRIKRKKFYELLEKTRRLNAEVTRNKESLGVLYPLTTWI 209
K +N T + KF LL+ A++ +NKE LG L T+W+
Sbjct: 219 KAQNGKTVEAPFDISKFKSLLQGQDMKEAQIQKNKEELGQLTYPTSWV 266
>ref|NP_682195.1| cation efflux system protein [Thermosynechococcus elongatus BP-1]
gi|22295129|dbj|BAC08957.1| cation efflux system protein
[Thermosynechococcus elongatus BP-1]
Length = 277
Score = 29.6 bits (65), Expect = 9.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 238 LNSLCFELLQHSVSEFSLKAHKISFV*SDVWLLL 339
L +CFE+LQ +V + H ++ +++W+L+
Sbjct: 70 LGMVCFEILQSAVERLLHQTHAVTITGAELWILI 103
>ref|NP_712755.1| Methyl-accepting chemotaxis protein tlpA [Leptospira interrogans
serovar lai str. 56601]
gi|24196366|gb|AAN49773.1|AE011424_11 Methyl-accepting
chemotaxis protein tlpA [Leptospira interrogans serovar
lai str. 56601]
Length = 846
Score = 29.6 bits (65), Expect = 9.9
Identities = 20/88 (22%), Positives = 41/88 (45%)
Frame = +1
Query: 52 TVSRITLKPKSIKIQTYDS*TLVDIDSPKLTTNYNFIHYIKHEMKR**NTLQKSKSSTDT 231
++ I ++IQT + +L++ + + + IH I H M++ T+ + + T+
Sbjct: 581 SIEEIVAGMNGVEIQTNEQVSLLNQLASDMNQFSDSIHKISHNMEK---TMSEVERITEE 637
Query: 232 THLNSLCFELLQHSVSEFSLKAHKISFV 315
EL HS+++ S + IS V
Sbjct: 638 AKKGGNSLELTNHSITKISNSSEDISGV 665
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,270,221
Number of Sequences: 1393205
Number of extensions: 4634690
Number of successful extensions: 9937
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9937
length of database: 448,689,247
effective HSP length: 99
effective length of database: 310,761,952
effective search space used: 7458286848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
