Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003759A_C01 KMC003759A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567046.1| expressed protein; protein id: At3g57280.1, sup... 137 1e-31
pir||T45806 hypothetical protein F28O9.130 - Arabidopsis thalian... 129 2e-29
ref|NP_188687.1| unknown protein; protein id: At3g20510.1 [Arabi... 51 1e-05
pir||T14437 inner envelope membrane protein precursor, non-green... 49 4e-05
ref|NP_565892.1| putative non-green plastid inner envelope membr... 49 5e-05
>ref|NP_567046.1| expressed protein; protein id: At3g57280.1, supported by cDNA:
14487., supported by cDNA: gi_14517380, supported by
cDNA: gi_15450538 [Arabidopsis thaliana]
gi|14517381|gb|AAK62581.1| AT3g57280/F28O9_130
[Arabidopsis thaliana] gi|15450539|gb|AAK96447.1|
AT3g57280/F28O9_130 [Arabidopsis thaliana]
gi|21553454|gb|AAM62547.1| unknown [Arabidopsis
thaliana]
Length = 226
Score = 137 bits (345), Expect = 1e-31
Identities = 61/88 (69%), Positives = 74/88 (83%)
Frame = -2
Query: 630 LYGGALLFLSTFSLKVWKQGKSSLPFILGQAALSGILIWKNFQSYSLAKKLFPTGFTAII 451
LYGG LL LST SLK+W++GKSS P+ILGQA LS ++ WKNF +YS+ KKLFP G A+I
Sbjct: 135 LYGGGLLALSTLSLKIWREGKSSFPYILGQAVLSAVVFWKNFTAYSMTKKLFPAGVFAVI 194
Query: 450 SSAMLCFYLYVLISGGNPPPKKLKPSAS 367
S+ MLCFY YV++SGGNPPPKKLKPSA+
Sbjct: 195 SACMLCFYSYVVLSGGNPPPKKLKPSAT 222
>pir||T45806 hypothetical protein F28O9.130 - Arabidopsis thaliana
gi|6735307|emb|CAB68134.1| hypothetical protein
[Arabidopsis thaliana]
Length = 239
Score = 129 bits (325), Expect = 2e-29
Identities = 62/101 (61%), Positives = 75/101 (73%), Gaps = 13/101 (12%)
Frame = -2
Query: 630 LYGGALLFLSTFSLKVWKQGKSSLPFILGQAA-------------LSGILIWKNFQSYSL 490
LYGG LL LST SLK+W++GKSS P+ILGQAA LS ++ WKNF +YS+
Sbjct: 135 LYGGGLLALSTLSLKIWREGKSSFPYILGQAAFVLTHFSKPEIAVLSAVVFWKNFTAYSM 194
Query: 489 AKKLFPTGFTAIISSAMLCFYLYVLISGGNPPPKKLKPSAS 367
KKLFP G A+IS+ MLCFY YV++SGGNPPPKKLKPSA+
Sbjct: 195 TKKLFPAGVFAVISACMLCFYSYVVLSGGNPPPKKLKPSAT 235
>ref|NP_188687.1| unknown protein; protein id: At3g20510.1 [Arabidopsis thaliana]
gi|11994139|dbj|BAB01160.1|
emb|CAB68134.1~gene_id:K10D20.5~similar to unknown
protein [Arabidopsis thaliana]
Length = 119
Score = 51.2 bits (121), Expect = 1e-05
Identities = 30/80 (37%), Positives = 45/80 (55%), Gaps = 1/80 (1%)
Frame = -2
Query: 621 GALLFLSTF-SLKVWKQGKSSLPFILGQAALSGILIWKNFQSYSLAKKLFPTGFTAIISS 445
G LL L+ + SLK +++ K+S ++ Q ++ L Q Y L K+ P G A IS+
Sbjct: 38 GLLLILAGYISLKAFEKKKNSTIAMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVAGISA 97
Query: 444 AMLCFYLYVLISGGNPPPKK 385
M CFY+Y + +GGN P K
Sbjct: 98 LMTCFYVYKIATGGNKFPAK 117
>pir||T14437 inner envelope membrane protein precursor, non-green plastid - wild
cabbage gi|1143711|gb|AAA84891.1| non-green plastid
inner envelope membrane protein precursor
Length = 336
Score = 49.3 bits (116), Expect = 4e-05
Identities = 28/82 (34%), Positives = 40/82 (48%)
Frame = -2
Query: 630 LYGGALLFLSTFSLKVWKQGKSSLPFILGQAALSGILIWKNFQSYSLAKKLFPTGFTAII 451
+ GGAL LS SLK + G+SS F+ GQ A+ I+ + + + F T +
Sbjct: 237 ILGGALFALSMASLKAQRLGESSAKFLKGQMAIVAIIFLRELKLVLFQRSTFMGFLTTLT 296
Query: 450 SSAMLCFYLYVLISGGNPPPKK 385
S +L FY Y L+S P K
Sbjct: 297 SGGVLAFYGYKLVSNKEKGPNK 318
>ref|NP_565892.1| putative non-green plastid inner envelope membrane protein; protein
id: At2g38550.1, supported by cDNA: 25626. [Arabidopsis
thaliana] gi|14334694|gb|AAK59525.1| putative non-green
plastid inner envelope membrane protein [Arabidopsis
thaliana] gi|20197395|gb|AAC67363.2| putative non-green
plastid inner envelope membrane protein [Arabidopsis
thaliana] gi|22136954|gb|AAM91706.1| putative non-green
plastid inner envelope membrane protein [Arabidopsis
thaliana]
Length = 335
Score = 48.9 bits (115), Expect = 5e-05
Identities = 27/73 (36%), Positives = 40/73 (53%)
Frame = -2
Query: 630 LYGGALLFLSTFSLKVWKQGKSSLPFILGQAALSGILIWKNFQSYSLAKKLFPTGFTAII 451
+ GGAL LS SLK ++G+SS F+ GQ A+ I+ + + K F FT +
Sbjct: 237 ILGGALFALSLASLKSHRKGESSTKFLKGQMAIVAIIFLRELRLLLSQKSTFLGFFTTLT 296
Query: 450 SSAMLCFYLYVLI 412
S +L FYLY ++
Sbjct: 297 SGGVLGFYLYKMV 309
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,081,221
Number of Sequences: 1393205
Number of extensions: 10331010
Number of successful extensions: 20835
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 20355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20829
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
