Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003738A_C02 KMC003738A_c02
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06396 isoprenylated protein - soybean (fragment) gi|532705... 115 3e-25
pir||T06394 isoprenylated protein - soybean (fragment) gi|532703... 111 7e-24
gb|AAL38281.1| unknown protein [Arabidopsis thaliana] gi|2014872... 99 5e-20
gb|AAD09505.1| ATFP1 [Arabidopsis thaliana] 99 5e-20
emb|CAA07370.1| proline-rich protein [Capsicum annuum] 94 9e-19
>pir||T06396 isoprenylated protein - soybean (fragment) gi|532705|gb|AAA65013.1|
unknown
Length = 154
Score = 115 bits (289), Expect = 3e-25
Identities = 60/102 (58%), Positives = 68/102 (65%), Gaps = 5/102 (4%)
Frame = -2
Query: 542 SEKPKEMPPPPHVPPPPVPMCPGP---PPVAVPIGVCCAS--CYEGRPGGPCFEGYGGPP 378
+EKPK P P P P P+ P P+AVP+G+ A CYEGRP GP +E YGGP
Sbjct: 55 AEKPKPGPEKPKDKPAPAPLPVQPHMAAPMAVPVGMLYAPPPCYEGRPVGPGYE-YGGPM 113
Query: 377 PCYDSYYGRPVYDSYGGSRPCYVSRRCDEYFSEENTNACIIM 252
CYD YY RPVYDSYGG RPCYV+R D+YFSEEN CIIM
Sbjct: 114 FCYDGYYARPVYDSYGGGRPCYVNRG-DQYFSEENPQGCIIM 154
>pir||T06394 isoprenylated protein - soybean (fragment) gi|532703|gb|AAA65012.1|
unknown
Length = 130
Score = 111 bits (277), Expect = 7e-24
Identities = 57/101 (56%), Positives = 63/101 (61%), Gaps = 5/101 (4%)
Frame = -2
Query: 539 EKPKEMPPPPHVPPPPVPMCPGP---PPVAVPIGVCCAS--CYEGRPGGPCFEGYGGPPP 375
EKPK P P P P P+ P P+AVP+G+ A CY GRP GP +E YGGP
Sbjct: 32 EKPKPGPEKPKDKPTPAPLPVQPHIAAPMAVPVGMLYAPPPCYGGRPVGPGYE-YGGPML 90
Query: 374 CYDSYYGRPVYDSYGGSRPCYVSRRCDEYFSEENTNACIIM 252
CYD YY RPVYDSY G RPCY RCD+YFSEEN C IM
Sbjct: 91 CYDGYYARPVYDSYSGGRPCY-GNRCDQYFSEENPQGCTIM 130
>gb|AAL38281.1| unknown protein [Arabidopsis thaliana] gi|20148729|gb|AAM10255.1|
unknown protein [Arabidopsis thaliana]
Length = 254
Score = 98.6 bits (244), Expect = 5e-20
Identities = 56/117 (47%), Positives = 67/117 (56%), Gaps = 15/117 (12%)
Frame = -2
Query: 557 PAPPPSEKPKEMPPPPHVPPP-PVPMCPGPPPVAVPI------GVCCASCYEGRPGGPCF 399
PAP P+ P P P P P P P PGPPP A+P+ +CC Y+G GGP F
Sbjct: 142 PAPAPAPAPAAKPAPAPAPAPAPAPKQPGPPPQAIPMMPQGQPAMCCGPYYDGY-GGPAF 200
Query: 398 EGYGGPPPCYDSYYGRPVYDSYGGS--------RPCYVSRRCDEYFSEENTNACIIM 252
GYG PP Y+ YGRPVY+S+GG R C+V+ RCD YFSEEN +C IM
Sbjct: 201 NGYGMPPQPYEC-YGRPVYESWGGGCPPPPPAYRQCHVT-RCD-YFSEENPQSCSIM 254
>gb|AAD09505.1| ATFP1 [Arabidopsis thaliana]
Length = 181
Score = 98.6 bits (244), Expect = 5e-20
Identities = 56/117 (47%), Positives = 67/117 (56%), Gaps = 15/117 (12%)
Frame = -2
Query: 557 PAPPPSEKPKEMPPPPHVPPP-PVPMCPGPPPVAVPI------GVCCASCYEGRPGGPCF 399
PAP P+ P P P P P P P PGPPP A+P+ +CC Y+G GGP F
Sbjct: 69 PAPAPAPAPAAKPAPAPAPAPAPAPKQPGPPPQAIPMMPQGQPAMCCGPYYDGY-GGPAF 127
Query: 398 EGYGGPPPCYDSYYGRPVYDSYGGS--------RPCYVSRRCDEYFSEENTNACIIM 252
GYG PP Y+ YGRPVY+S+GG R C+V+ RCD YFSEEN +C IM
Sbjct: 128 NGYGMPPQPYEC-YGRPVYESWGGGCPPPPPAYRQCHVT-RCD-YFSEENPQSCSIM 181
>emb|CAA07370.1| proline-rich protein [Capsicum annuum]
Length = 238
Score = 94.4 bits (233), Expect = 9e-19
Identities = 53/110 (48%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
Frame = -2
Query: 551 PPPSEKPKEMPPPPHVPPPP------VPMCPGPPPVAVPIGVCCASCYEGRPGGPCFEGY 390
P EKPKE P PP V PPP VP+ PPP P G CC CY G GGPC++ Y
Sbjct: 133 PKEPEKPKEAPKPPPVAPPPAPESVPVPVQEYPPP---PSGYCCGQCYAGHTGGPCYQWY 189
Query: 389 G---GPPPCYDSYYGRPVYDSYGGSRPCYVSRRCDEYF-SEENTNACIIM 252
G PPPCY +Y Y +R CYVS RCD Y S+EN C IM
Sbjct: 190 GRPVPPPPCYGNYGYSYGPGPYCYNRGCYVS-RCDPYLCSDENATGCSIM 238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,750,886
Number of Sequences: 1393205
Number of extensions: 16433019
Number of successful extensions: 345005
Number of sequences better than 10.0: 5156
Number of HSP's better than 10.0 without gapping: 85099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221041
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
