Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003737A_C01 KMC003737A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195967.1| putative protein; protein id: At5g03470.1, supp... 115 8e-28
ref|NP_187599.1| B' regulatory subunit of PP2A (AtB'beta); prote... 116 2e-25
gb|AAK00963.1|AC079736_3 putative B' regulatory subunit of prote... 102 3e-24
ref|NP_191053.1| protein phosphatase 2A regulatory subunit B-lik... 102 4e-21
ref|NP_189231.1| putative B regulatory subunit of protein phosph... 90 3e-17
>ref|NP_195967.1| putative protein; protein id: At5g03470.1, supported by cDNA:
gi_2160689 [Arabidopsis thaliana]
gi|11291677|pir||T48372 AtB'alpha regulatory subunit of
PP2A - Arabidopsis thaliana gi|2160690|gb|AAB58900.1| B'
regulatory subunit of PP2A [Arabidopsis thaliana]
gi|7378631|emb|CAB83307.1| AtB'alpha regulatory subunit
of PP2A [Arabidopsis thaliana]
gi|27754602|gb|AAO22747.1| unknown protein [Arabidopsis
thaliana]
Length = 495
Score = 115 bits (288), Expect(2) = 8e-28
Identities = 52/71 (73%), Positives = 62/71 (87%)
Frame = -3
Query: 605 NNEHIVSLIAQNRTVILPIIFEAFEKNIESHWHQAVHGLTVNVRKMFMEMDAELFEECQS 426
NNEH+V LIAQNR VILPIIF + EKNIESHW+QAVHGL+ N+++MFMEMD ELFEECQ
Sbjct: 397 NNEHVVGLIAQNRGVILPIIFASLEKNIESHWNQAVHGLSANIKRMFMEMDPELFEECQQ 456
Query: 425 QHEEKQGSSQR 393
Q+EEKQ S++
Sbjct: 457 QYEEKQAKSKQ 467
Score = 30.0 bits (66), Expect(2) = 8e-28
Identities = 14/36 (38%), Positives = 24/36 (65%), Gaps = 1/36 (2%)
Frame = -1
Query: 418 KRNRAQAKEMAEQRELNWKRLAEAAAQNGVED-MVT 314
+ +A++K++ EQR+ W+RL EA + ED M+T
Sbjct: 459 EEKQAKSKQVEEQRQNRWRRLDEAVEEREREDPMIT 494
>ref|NP_187599.1| B' regulatory subunit of PP2A (AtB'beta); protein id: At3g09880.1,
supported by cDNA: gi_18176454, supported by cDNA:
gi_21280991, supported by cDNA: gi_2160691 [Arabidopsis
thaliana] gi|2160692|gb|AAB58901.1| B' regulatory
subunit of PP2A [Arabidopsis thaliana]
gi|6681331|gb|AAF23248.1|AC015985_6 B' regulatory
subunit of PP2A (AtB'beta) [Arabidopsis thaliana]
gi|18176455|gb|AAL60047.1| putative B' regulatory
subunit of PP2A AtB'beta [Arabidopsis thaliana]
gi|21280992|gb|AAM44900.1| putative B' regulatory
subunit of PP2A AtB'beta [Arabidopsis thaliana]
Length = 499
Score = 116 bits (291), Expect = 2e-25
Identities = 61/103 (59%), Positives = 71/103 (68%), Gaps = 7/103 (6%)
Frame = -3
Query: 605 NNEHIVSLIAQNRTVILPIIFEAFEKNIESHWHQAVHGLTVNVRKMFMEMDAELFEECQS 426
NNEHIV LIAQNR+VILPII+ EKNI+SHW+QAVHGLT N++KMFMEMD ELFEECQ
Sbjct: 397 NNEHIVGLIAQNRSVILPIIYPTLEKNIQSHWNQAVHGLTTNIKKMFMEMDPELFEECQR 456
Query: 425 QHEEKQGSSQRNG*AAGTELEETGR-------SCCTERGGGYG 318
Q+EEKQ S+ E+EE + ER GG G
Sbjct: 457 QYEEKQAKSK--------EVEEQRQYTWKRLAEAAAERDGGGG 491
>gb|AAK00963.1|AC079736_3 putative B' regulatory subunit of protein phosphatase 2A,
5'-partial [Oryza sativa]
Length = 93
Score = 102 bits (253), Expect(2) = 3e-24
Identities = 47/64 (73%), Positives = 56/64 (87%)
Frame = -3
Query: 587 SLIAQNRTVILPIIFEAFEKNIESHWHQAVHGLTVNVRKMFMEMDAELFEECQSQHEEKQ 408
SLIAQNR+VI PIIFEA E+NI SHW+QAVHGLT NVRKMF++MD+ELFEECQ Q+ EKQ
Sbjct: 1 SLIAQNRSVIFPIIFEALERNITSHWNQAVHGLTANVRKMFLDMDSELFEECQQQYIEKQ 60
Query: 407 GSSQ 396
++
Sbjct: 61 ARAK 64
Score = 31.6 bits (70), Expect(2) = 3e-24
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -1
Query: 409 RAQAKEMAEQRELNWKRLAEAAAQNGVEDMV 317
+A+AK+M EQR W++L AAA+ +DMV
Sbjct: 60 QARAKDMEEQRLSAWRQLEAAAAKASGDDMV 90
>ref|NP_191053.1| protein phosphatase 2A regulatory subunit B-like protein; protein
id: At3g54930.1 [Arabidopsis thaliana]
gi|7486344|pir||T06727 hypothetical protein F28P10.90 -
Arabidopsis thaliana gi|4678300|emb|CAB41091.1| B'
regulatory subunit of PP2A-like protein [Arabidopsis
thaliana] gi|11139998|emb|CAC16085.1| B regulatory
subunit of PP2A [Arabidopsis thaliana]
Length = 497
Score = 102 bits (254), Expect = 4e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Frame = -3
Query: 605 NNEHIVSLIAQNRTVILPIIFEAFEKNIESHWHQAVHGLTVNVRKMFMEMDAELFEECQS 426
NNEHIV LIAQN+ VI PIIFEA E+N++ HW+QAVHGL+ NVR+MF+EMD ELFEEC+
Sbjct: 406 NNEHIVGLIAQNKDVIFPIIFEALERNMKGHWNQAVHGLSENVRRMFLEMDTELFEECEK 465
Query: 425 QHEEKQGSS 399
Q+ E + +
Sbjct: 466 QYLENEAKA 474
Score = 36.2 bits (82), Expect = 0.34
Identities = 20/47 (42%), Positives = 26/47 (54%)
Frame = -1
Query: 481 MFVKCSWKWMRNCLKSARASMKRNRAQAKEMAEQRELNWKRLAEAAA 341
MF++ + C K N A+A E+ EQREL WKRL EAA+
Sbjct: 451 MFLEMDTELFEECEKQ----YLENEAKACELLEQRELTWKRLEEAAS 493
>ref|NP_189231.1| putative B regulatory subunit of protein phosphatase 2A; protein
id: At3g26020.1, supported by cDNA: gi_14194122,
supported by cDNA: gi_16323339 [Arabidopsis thaliana]
gi|9279607|dbj|BAB01065.1| protein phosphatase 2A
regulatory subunit B' [Arabidopsis thaliana]
gi|14194123|gb|AAK56256.1|AF367267_1 AT3g26020/MPE11_17
[Arabidopsis thaliana] gi|16323340|gb|AAL15383.1|
AT3g26020/MPE11_17 [Arabidopsis thaliana]
Length = 510
Score = 89.7 bits (221), Expect = 3e-17
Identities = 45/87 (51%), Positives = 58/87 (65%), Gaps = 3/87 (3%)
Frame = -3
Query: 605 NNEHIVSLIAQNRTVILPIIFEAFEKNIESHWHQAVHGLTVNVRKMFMEMDAELFEECQS 426
NN HI +LI QNR VILPIIF A E+N + HW+QAVH LT+NVRK+F ++D ELF+EC +
Sbjct: 419 NNNHIENLIMQNRKVILPIIFPALERNAQKHWNQAVHSLTLNVRKIFHDLDPELFKECLA 478
Query: 425 ---QHEEKQGSSQRNG*AAGTELEETG 354
+ E K ++ A LEE G
Sbjct: 479 KFKEDESKAAETEAKREATWKRLEELG 505
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,861,706
Number of Sequences: 1393205
Number of extensions: 10098630
Number of successful extensions: 30701
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 29068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30523
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
