Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003734A_C01 KMC003734A_c01
(684 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O04630|SYT_ARATH Threonyl-tRNA synthetase, mitochondrial prec... 205 4e-52
pir||T51624 threonine-tRNA ligase (EC 6.1.1.3) [imported] - Arab... 205 4e-52
ref|NP_198035.1| threonyl-tRNA synthetase; protein id: At5g26830... 205 4e-52
gb|AAK82468.1| AT5g26830/F2P16_90 [Arabidopsis thaliana] gi|2902... 205 4e-52
pir||T01763 threonine-tRNA ligase (EC 6.1.1.3) - Arabidopsis tha... 196 2e-49
>sp|O04630|SYT_ARATH Threonyl-tRNA synthetase, mitochondrial precursor (Threonine--tRNA
ligase) (ThrRS)
Length = 709
Score = 205 bits (522), Expect = 4e-52
Identities = 102/130 (78%), Positives = 112/130 (85%)
Frame = -2
Query: 683 RPVMIHRAILGSVERMFAILLEHYKGKWPLWLSPRQAIVCPVSEKSQAYALQVRDQIHQA 504
RPVMIHRA+LGSVERMFAILLEHYKGKWP W+SPRQAIVCP+SEKSQ YA +V+ QI A
Sbjct: 579 RPVMIHRAVLGSVERMFAILLEHYKGKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDA 638
Query: 503 GYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHSVMSIENLL 324
G++VDAD TDRKI KKVREAQLAQYNYILVVGE EA TGQVSVRVRD A HSV SIE+LL
Sbjct: 639 GFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLL 698
Query: 323 KHFSDEVAAF 294
+ F + A F
Sbjct: 699 EEFKAKTAEF 708
>pir||T51624 threonine-tRNA ligase (EC 6.1.1.3) [imported] - Arabidopsis
thaliana gi|3617770|emb|CAA74705.1| threonyl-tRNA
synthetase [Arabidopsis thaliana]
Length = 709
Score = 205 bits (522), Expect = 4e-52
Identities = 102/130 (78%), Positives = 112/130 (85%)
Frame = -2
Query: 683 RPVMIHRAILGSVERMFAILLEHYKGKWPLWLSPRQAIVCPVSEKSQAYALQVRDQIHQA 504
RPVMIHRA+LGSVERMFAILLEHYKGKWP W+SPRQAIVCP+SEKSQ YA +V+ QI A
Sbjct: 579 RPVMIHRAVLGSVERMFAILLEHYKGKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDA 638
Query: 503 GYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHSVMSIENLL 324
G++VDAD TDRKI KKVREAQLAQYNYILVVGE EA TGQVSVRVRD A HSV SIE+LL
Sbjct: 639 GFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLL 698
Query: 323 KHFSDEVAAF 294
+ F + A F
Sbjct: 699 EEFKAKTAEF 708
>ref|NP_198035.1| threonyl-tRNA synthetase; protein id: At5g26830.1, supported by
cDNA: gi_15081625 [Arabidopsis thaliana]
Length = 676
Score = 205 bits (522), Expect = 4e-52
Identities = 102/130 (78%), Positives = 112/130 (85%)
Frame = -2
Query: 683 RPVMIHRAILGSVERMFAILLEHYKGKWPLWLSPRQAIVCPVSEKSQAYALQVRDQIHQA 504
RPVMIHRA+LGSVERMFAILLEHYKGKWP W+SPRQAIVCP+SEKSQ YA +V+ QI A
Sbjct: 546 RPVMIHRAVLGSVERMFAILLEHYKGKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDA 605
Query: 503 GYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHSVMSIENLL 324
G++VDAD TDRKI KKVREAQLAQYNYILVVGE EA TGQVSVRVRD A HSV SIE+LL
Sbjct: 606 GFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLL 665
Query: 323 KHFSDEVAAF 294
+ F + A F
Sbjct: 666 EEFKAKTAEF 675
>gb|AAK82468.1| AT5g26830/F2P16_90 [Arabidopsis thaliana]
gi|29028762|gb|AAO64760.1| At5g26830/F2P16_90
[Arabidopsis thaliana]
Length = 676
Score = 205 bits (522), Expect = 4e-52
Identities = 102/130 (78%), Positives = 112/130 (85%)
Frame = -2
Query: 683 RPVMIHRAILGSVERMFAILLEHYKGKWPLWLSPRQAIVCPVSEKSQAYALQVRDQIHQA 504
RPVMIHRA+LGSVERMFAILLEHYKGKWP W+SPRQAIVCP+SEKSQ YA +V+ QI A
Sbjct: 546 RPVMIHRAVLGSVERMFAILLEHYKGKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDA 605
Query: 503 GYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHSVMSIENLL 324
G++VDAD TDRKI KKVREAQLAQYNYILVVGE EA TGQVSVRVRD A HSV SIE+LL
Sbjct: 606 GFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLL 665
Query: 323 KHFSDEVAAF 294
+ F + A F
Sbjct: 666 EEFKAKTAEF 675
>pir||T01763 threonine-tRNA ligase (EC 6.1.1.3) - Arabidopsis thaliana
gi|2191162|gb|AAB61048.1| Similar to threonyl-tRNA
synthetase; coded for by A. thaliana cDNA R65376
[Arabidopsis thaliana]
Length = 702
Score = 196 bits (498), Expect = 2e-49
Identities = 102/143 (71%), Positives = 112/143 (77%), Gaps = 13/143 (9%)
Frame = -2
Query: 683 RPVMIHRAILGSVERMFAILLEHYKGKWPLWLSPRQAIVCPVSEKSQAYALQVRDQIHQA 504
RPVMIHRA+LGSVERMFAILLEHYKGKWP W+SPRQAIVCP+SEKSQ YA +V+ QI A
Sbjct: 559 RPVMIHRAVLGSVERMFAILLEHYKGKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDA 618
Query: 503 GYHVDADTTDRKIQKK-------------VREAQLAQYNYILVVGEEEANTGQVSVRVRD 363
G++VDAD TDRKI KK VREAQLAQYNYILVVGE EA TGQVSVRVRD
Sbjct: 619 GFYVDADLTDRKIDKKVNDFGSCSKFCSVVREAQLAQYNYILVVGETEAATGQVSVRVRD 678
Query: 362 KADHSVMSIENLLKHFSDEVAAF 294
A HSV SIE+LL+ F + A F
Sbjct: 679 NAAHSVKSIEDLLEEFKAKTAEF 701
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,337,655
Number of Sequences: 1393205
Number of extensions: 11143249
Number of successful extensions: 29264
Number of sequences better than 10.0: 282
Number of HSP's better than 10.0 without gapping: 28234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29168
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
