Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003725A_C01 KMC003725A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL85017.1| putative DNA-binding protein [Arabidopsis thaliana] 50 1e-05
gb|AAM63847.1| putative DNA-binding protein [Arabidopsis thaliana] 50 1e-05
ref|NP_177064.1| putative DNA-binding protein; protein id: At1g6... 50 1e-05
ref|NP_704594.1| mitochondrial carrier protein, putative [Plasmo... 38 0.096
gb|EAA15724.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.62
>gb|AAL85017.1| putative DNA-binding protein [Arabidopsis thaliana]
Length = 220
Score = 50.4 bits (119), Expect = 1e-05
Identities = 31/67 (46%), Positives = 40/67 (59%)
Frame = -2
Query: 557 QALQSAGLDLSQASISVQINLGNRANIGPSGGTSSTQNHDNPLCSSQAIAHFRDAGSGED 378
QALQ+AG+DLSQA +SVQI+LG RAN G T + NPL RD+ E+
Sbjct: 156 QALQNAGIDLSQAKLSVQIDLGKRAN---QGLTHEEPSSKNPLSYD---TQGRDSSVEEE 209
Query: 377 SDHQAKK 357
S+H K+
Sbjct: 210 SEHSHKR 216
>gb|AAM63847.1| putative DNA-binding protein [Arabidopsis thaliana]
Length = 311
Score = 50.4 bits (119), Expect = 1e-05
Identities = 31/67 (46%), Positives = 40/67 (59%)
Frame = -2
Query: 557 QALQSAGLDLSQASISVQINLGNRANIGPSGGTSSTQNHDNPLCSSQAIAHFRDAGSGED 378
QALQ+AG+DLSQA +SVQI+LG RAN G T + NPL RD+ E+
Sbjct: 247 QALQNAGIDLSQAKLSVQIDLGKRAN---QGLTHEEPSSKNPLSYD---TQGRDSSVEEE 300
Query: 377 SDHQAKK 357
S+H K+
Sbjct: 301 SEHSHKR 307
>ref|NP_177064.1| putative DNA-binding protein; protein id: At1g69010.1, supported by
cDNA: 27793. [Arabidopsis thaliana]
gi|25404792|pir||E96714 probable DNA-binding protein
T6L1.19 [imported] - Arabidopsis thaliana
gi|12323222|gb|AAG51594.1|AC011665_15 putative
DNA-binding protein [Arabidopsis thaliana]
gi|26983866|gb|AAN86185.1| putative DNA-binding protein
[Arabidopsis thaliana]
Length = 311
Score = 50.4 bits (119), Expect = 1e-05
Identities = 31/67 (46%), Positives = 40/67 (59%)
Frame = -2
Query: 557 QALQSAGLDLSQASISVQINLGNRANIGPSGGTSSTQNHDNPLCSSQAIAHFRDAGSGED 378
QALQ+AG+DLSQA +SVQI+LG RAN G T + NPL RD+ E+
Sbjct: 247 QALQNAGIDLSQAKLSVQIDLGKRAN---QGLTHEEPSSKNPLSYD---TQGRDSSVEEE 300
Query: 377 SDHQAKK 357
S+H K+
Sbjct: 301 SEHSHKR 307
>ref|NP_704594.1| mitochondrial carrier protein, putative [Plasmodium falciparum 3D7]
gi|23504953|emb|CAD51737.1| mitochondrial carrier
protein, putative [Plasmodium falciparum 3D7]
Length = 1199
Score = 37.7 bits (86), Expect = 0.096
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 79 SVTLNNNNNNYHTNKIDDMPTLQRKSQYLQNNHVFKVWLVLITFINGLKQTN 234
S+ +NNNNNN + K+D L K Y N H ++L ++N K TN
Sbjct: 488 SLPINNNNNNNNNTKMDTFIKLINKCLYNNNAHKIDHKILLSNYLNLFKHTN 539
>gb|EAA15724.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1554
Score = 35.0 bits (79), Expect = 0.62
Identities = 23/57 (40%), Positives = 28/57 (48%), Gaps = 7/57 (12%)
Frame = +1
Query: 25 VVHLYPNNQAFTIMPSKSSVTLNNNNNNY-------HTNKIDDMPTLQRKSQYLQNN 174
V +LY N+ TI K +V+ NNNNNNY NKI + LQ K Y N
Sbjct: 1406 VTNLYKTNE--TIETEKINVSPNNNNNNYAIGIYSKFINKIKTLRFLQIKEMYYMQN 1460
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,487,627
Number of Sequences: 1393205
Number of extensions: 10598261
Number of successful extensions: 70588
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 30208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50339
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
