Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003723A_C01 KMC003723A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564315.1| expressed protein; protein id: At1g28710.1, sup... 114 6e-25
pir||A86412 protein F1K23.10 [imported] - Arabidopsis thaliana g... 109 2e-23
ref|NP_174191.1| hypothetical protein common family; protein id:... 109 2e-23
gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana] 105 4e-22
ref|NP_174190.1| hypothetical protein; protein id: At1g28690.1 [... 104 6e-22
>ref|NP_564315.1| expressed protein; protein id: At1g28710.1, supported by cDNA:
gi_15027990, supported by cDNA: gi_20259204 [Arabidopsis
thaliana] gi|10764852|gb|AAG22832.1|AC007508_5 F1K23.9
[Arabidopsis thaliana] gi|15027991|gb|AAK76526.1|
unknown protein [Arabidopsis thaliana]
gi|20259205|gb|AAM14318.1| unknown protein [Arabidopsis
thaliana]
Length = 340
Score = 114 bits (285), Expect = 6e-25
Identities = 55/99 (55%), Positives = 67/99 (67%)
Frame = -1
Query: 491 STGLKEQDVLLGLINNGIIARLGLKVRFLETLYFSGFCQDSKDFKAVTTVHANCCRSITA 312
STG+KEQDVL L+++G +LGL V FL T FSGFCQDS D VTTVHANCCR I A
Sbjct: 238 STGMKEQDVLKSLLDSGFFNQLGLNVGFLNTTEFSGFCQDSHDMGVVTTVHANCCRHILA 297
Query: 311 KVADLKAVLRDWKKFRKLEANAEVINLQWGTHDWCWQSW 195
K++DL VLRDWK+++ A +N W H C +SW
Sbjct: 298 KISDLTLVLRDWKRYK-----ASHVNSNWSPHVECGRSW 331
>pir||A86412 protein F1K23.10 [imported] - Arabidopsis thaliana
gi|10764853|gb|AAG22833.1|AC007508_6 F1K23.10
[Arabidopsis thaliana]
Length = 338
Score = 109 bits (272), Expect = 2e-23
Identities = 53/99 (53%), Positives = 66/99 (66%)
Frame = -1
Query: 491 STGLKEQDVLLGLINNGIIARLGLKVRFLETLYFSGFCQDSKDFKAVTTVHANCCRSITA 312
S G+KEQDVL L+++G +LGL V FL T FSGFCQDS D AVTTVHANCC I A
Sbjct: 236 SLGMKEQDVLKNLLDSGFFNQLGLNVGFLSTAEFSGFCQDSPDMGAVTTVHANCCVHIPA 295
Query: 311 KVADLKAVLRDWKKFRKLEANAEVINLQWGTHDWCWQSW 195
K++DL LRDWK+++ A +N +W H C +SW
Sbjct: 296 KISDLSLALRDWKRYK-----ASRVNSRWSPHVECRRSW 329
>ref|NP_174191.1| hypothetical protein common family; protein id: At1g28700.1
[Arabidopsis thaliana]
Length = 307
Score = 109 bits (272), Expect = 2e-23
Identities = 53/99 (53%), Positives = 66/99 (66%)
Frame = -1
Query: 491 STGLKEQDVLLGLINNGIIARLGLKVRFLETLYFSGFCQDSKDFKAVTTVHANCCRSITA 312
S G+KEQDVL L+++G +LGL V FL T FSGFCQDS D AVTTVHANCC I A
Sbjct: 205 SLGMKEQDVLKNLLDSGFFNQLGLNVGFLSTAEFSGFCQDSPDMGAVTTVHANCCVHIPA 264
Query: 311 KVADLKAVLRDWKKFRKLEANAEVINLQWGTHDWCWQSW 195
K++DL LRDWK+++ A +N +W H C +SW
Sbjct: 265 KISDLSLALRDWKRYK-----ASRVNSRWSPHVECRRSW 298
>gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana]
Length = 841
Score = 105 bits (261), Expect = 4e-22
Identities = 53/96 (55%), Positives = 63/96 (65%)
Frame = -1
Query: 494 NSTGLKEQDVLLGLINNGIIARLGLKVRFLETLYFSGFCQDSKDFKAVTTVHANCCRSIT 315
NSTG+KEQDVL L+++G +LGL V FL T FSGFCQDS VTTVHANCC I
Sbjct: 226 NSTGMKEQDVLKNLLDSGFFNQLGLNVGFLSTTEFSGFCQDSPHMGVVTTVHANCCLHIP 285
Query: 314 AKVADLKAVLRDWKKFRKLEANAEVINLQWGTHDWC 207
AKV DL VLRDWK+++ A +N +W H C
Sbjct: 286 AKVFDLTRVLRDWKRYK-----ASHVNSKWSPHLKC 316
>ref|NP_174190.1| hypothetical protein; protein id: At1g28690.1 [Arabidopsis
thaliana]
Length = 705
Score = 104 bits (259), Expect = 6e-22
Identities = 52/93 (55%), Positives = 62/93 (65%)
Frame = -1
Query: 494 NSTGLKEQDVLLGLINNGIIARLGLKVRFLETLYFSGFCQDSKDFKAVTTVHANCCRSIT 315
NSTG+KEQDVL L+++G +LGL V FL T FSGFCQDS VTTVHANCC I
Sbjct: 163 NSTGMKEQDVLKNLLDSGFFNQLGLNVGFLSTTEFSGFCQDSPHMGVVTTVHANCCLHIP 222
Query: 314 AKVADLKAVLRDWKKFRKLEANAEVINLQWGTH 216
AKV DL VLRDWK+++ A +N +W H
Sbjct: 223 AKVFDLTRVLRDWKRYK-----ASHVNSKWSPH 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,708,372
Number of Sequences: 1393205
Number of extensions: 8700754
Number of successful extensions: 19806
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 19343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19798
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
