Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003718A_C01 KMC003718A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704882.1| small nuclear ribonucleoprotein (snRNP), putati... 34 1.3
ref|NP_188272.1| unknown protein; protein id: At3g16510.1 [Arabi... 33 2.3
ref|NP_521326.1| PROBABLE TRANSMEMBRANE DRUG EFFLUX PROTEIN [Ral... 32 3.9
ref|NP_692737.1| hypothetical protein [Oceanobacillus iheyensis ... 32 3.9
ref|NP_057897.1| programmed cell death protein 7; ES18 protein [... 32 5.0
>ref|NP_704882.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7] gi|23505245|emb|CAD52025.1| small
nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
Length = 193
Score = 33.9 bits (76), Expect = 1.3
Identities = 29/104 (27%), Positives = 48/104 (45%), Gaps = 26/104 (25%)
Frame = +3
Query: 6 PPSSTFFLF*NEFKLNINNLK-------------V*WNLNTADQSMKL*FFM-----ASI 131
PP+ T ++ E K+N+N+LK + N+ +++ F + +S
Sbjct: 7 PPNQTLYVNNLEDKINVNDLKFLLYEFFCPYGNIIDINIKKSNKGRGQAFIVFNNIASST 66
Query: 132 LTLKN-------SKNINIRWYKERKELVQN-EGKYDALI*YKDK 239
L KN KNINI + K + ++Q EG Y+ L+ YK K
Sbjct: 67 LAYKNLKGKMFLKKNININYAKTKSTIIQKIEGTYNPLLNYKSK 110
>ref|NP_188272.1| unknown protein; protein id: At3g16510.1 [Arabidopsis thaliana]
gi|9279650|dbj|BAB01150.1| contains similarity to SRC2
protein~gene_id:MDC8.14 [Arabidopsis thaliana]
Length = 360
Score = 33.1 bits (74), Expect = 2.3
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = -1
Query: 459 PPFHQAHGPIPTHSIHFFQPTQALNLAGPS 370
PP HQ++ P P HS H QP+Q+ + PS
Sbjct: 262 PPQHQSYPPPPGHSFHQTQPSQSFHGFAPS 291
>ref|NP_521326.1| PROBABLE TRANSMEMBRANE DRUG EFFLUX PROTEIN [Ralstonia solanacearum]
gi|17430230|emb|CAD16993.1| PROBABLE TRANSMEMBRANE DRUG
EFFLUX PROTEIN [Ralstonia solanacearum]
Length = 1040
Score = 32.3 bits (72), Expect = 3.9
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +3
Query: 378 QPSLVLGLAGKSVWNGLELAHVLDGMVAGI 467
QP+L+LG+ + WNGL+L LD V I
Sbjct: 283 QPALLLGIVMREGWNGLDLGKALDKEVGAI 312
>ref|NP_692737.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22777500|dbj|BAC13772.1| hypothetical conserved
protein [Oceanobacillus iheyensis]
Length = 171
Score = 32.3 bits (72), Expect = 3.9
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -3
Query: 415 TLFPANPSTKLG-WTITD*FGWDLMETWSGILG-WKSTTP-WLDIQ*KFGWTLEWTLGPI 245
T F +N +G WTI W L+ SG++G + S TP W + FG + G +
Sbjct: 55 TTFLSNMLLGMGIWTIWQMISWCLIGLLSGLIGKYVSKTPLWFIV--IFGIVSGYLFGIV 112
Query: 244 NSLSLYQIRASYFPSF 197
SL+ YQ+ + P +
Sbjct: 113 ISLTTYQVTGHFIPYY 128
>ref|NP_057897.1| programmed cell death protein 7; ES18 protein [Mus musculus]
gi|4416181|gb|AAD20240.1| ES18 [Mus musculus]
Length = 482
Score = 32.0 bits (71), Expect = 5.0
Identities = 15/38 (39%), Positives = 18/38 (46%)
Frame = -1
Query: 465 FQPPFHQAHGPIPTHSIHFFQPTQALNLAGPSQTNSAG 352
F PP Q GP P S F QP AL P++ + G
Sbjct: 37 FPPPLPQRPGPFPGASAPFLQPPLALQPRAPAEASRGG 74
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,074,638
Number of Sequences: 1393205
Number of extensions: 11800610
Number of successful extensions: 31347
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 28926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31318
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
