Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003714A_C02 KMC003714A_c02
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190750.1| chlorophyll synthetase; protein id: At3g51820.1... 142 3e-33
emb|CAB85464.1| chlorophyll synthase [Avena sativa] 134 9e-31
ref|NP_682329.1| chlorophyll a synthase [Thermosynechococcus elo... 98 7e-20
gb|ZP_00107657.1| hypothetical protein [Nostoc punctiforme] 92 3e-18
ref|ZP_00115892.1| hypothetical protein [Synechococcus sp. WH 8102] 91 7e-18
>ref|NP_190750.1| chlorophyll synthetase; protein id: At3g51820.1, supported by cDNA:
gi_14596066, supported by cDNA: gi_20148304 [Arabidopsis
thaliana] gi|2129675|pir||S60222 probable chlorophyll
synthetase G4 [imported] - Arabidopsis thaliana
gi|972938|gb|AAA96740.1| putative chlorophyll synthetase
gi|3068709|gb|AAC14409.1| putative chlorophyll
synthetase [Arabidopsis thaliana]
gi|14596067|gb|AAK68761.1| putative chlorophyll
synthetase [Arabidopsis thaliana]
gi|20148305|gb|AAM10043.1| chlorophyll synthetase
[Arabidopsis thaliana]
Length = 387
Score = 142 bits (357), Expect = 3e-33
Identities = 67/78 (85%), Positives = 72/78 (91%)
Frame = -2
Query: 549 KWICVGAIDITQLSIAGYLLGAGKPYYALALVGLIAPQVFFQFKYFLKDPVKYDVKYQAS 370
KWICVGAIDITQLS+AGYLL +GKPYYALALV LI PQ+ FQFKYFLKDPVKYDVKYQAS
Sbjct: 310 KWICVGAIDITQLSVAGYLLASGKPYYALALVALIIPQIVFQFKYFLKDPVKYDVKYQAS 369
Query: 369 AQPFLVLGLLVTALATSH 316
AQPFLVLG+ VTALA+ H
Sbjct: 370 AQPFLVLGIFVTALASQH 387
>emb|CAB85464.1| chlorophyll synthase [Avena sativa]
Length = 378
Score = 134 bits (336), Expect = 9e-31
Identities = 65/78 (83%), Positives = 68/78 (86%)
Frame = -2
Query: 549 KWICVGAIDITQLSIAGYLLGAGKPYYALALVGLIAPQVFFQFKYFLKDPVKYDVKYQAS 370
KWICVGAIDITQLS+A YLL GK YYALAL+GL PQV QF+YFLKDPVKYDVKYQAS
Sbjct: 301 KWICVGAIDITQLSVAAYLLSTGKLYYALALLGLTIPQVILQFQYFLKDPVKYDVKYQAS 360
Query: 369 AQPFLVLGLLVTALATSH 316
AQPF V GLLVTALATSH
Sbjct: 361 AQPFFVFGLLVTALATSH 378
>ref|NP_682329.1| chlorophyll a synthase [Thermosynechococcus elongatus BP-1]
gi|22295264|dbj|BAC09091.1| chlorophyll a synthase
[Thermosynechococcus elongatus BP-1]
Length = 350
Score = 97.8 bits (242), Expect = 7e-20
Identities = 49/77 (63%), Positives = 56/77 (72%)
Frame = -2
Query: 546 WICVGAIDITQLSIAGYLLGAGKPYYALALVGLIAPQVFFQFKYFLKDPVKYDVKYQASA 367
WICV IDI QL IAGYL+ YA+ L+ LI PQ+ FQ YFL+DP+K DVKYQASA
Sbjct: 271 WICVLMIDIFQLGIAGYLMAIHANLYAVLLILLIIPQIVFQDMYFLRDPLKNDVKYQASA 330
Query: 366 QPFLVLGLLVTALATSH 316
QPFLVLG+LV LA H
Sbjct: 331 QPFLVLGMLVVGLALGH 347
>gb|ZP_00107657.1| hypothetical protein [Nostoc punctiforme]
Length = 348
Score = 92.4 bits (228), Expect = 3e-18
Identities = 48/77 (62%), Positives = 54/77 (69%)
Frame = -2
Query: 546 WICVGAIDITQLSIAGYLLGAGKPYYALALVGLIAPQVFFQFKYFLKDPVKYDVKYQASA 367
WICV ID+ Q IA YL+ + YA LV LI PQ+ Q YFL+DPVK DVKYQASA
Sbjct: 269 WICVVTIDVFQGFIAAYLVSIHENLYAAILVLLIIPQITLQDMYFLRDPVKNDVKYQASA 328
Query: 366 QPFLVLGLLVTALATSH 316
QPFLVLG+LVT LA H
Sbjct: 329 QPFLVLGMLVTGLALGH 345
>ref|ZP_00115892.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 336
Score = 91.3 bits (225), Expect = 7e-18
Identities = 45/77 (58%), Positives = 57/77 (73%)
Frame = -2
Query: 546 WICVGAIDITQLSIAGYLLGAGKPYYALALVGLIAPQVFFQFKYFLKDPVKYDVKYQASA 367
WI G IDI QL++ L+ G+ + A+ LV LI PQ+ FQ + L+DPV++DVKYQASA
Sbjct: 253 WISAGMIDIFQLAMVAVLIAIGQHFAAVLLVLLIVPQITFQDIWLLRDPVEFDVKYQASA 312
Query: 366 QPFLVLGLLVTALATSH 316
QPFLVLG+LVTALA H
Sbjct: 313 QPFLVLGMLVTALAVGH 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,461,584
Number of Sequences: 1393205
Number of extensions: 8425197
Number of successful extensions: 18036
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18033
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
