Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003706A_C01 KMC003706A_c01
(437 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568185.1| expressed protein; protein id: At5g07900.1, sup... 72 2e-12
ref|NP_197781.1| putative protein; protein id: At5g23930.1 [Arab... 59 1e-08
ref|NP_176403.1| hypothetical protein; protein id: At1g62120.1 [... 59 2e-08
ref|NP_176392.1| hypothetical protein; protein id: At1g62010.1 [... 58 3e-08
ref|NP_176387.1| hypothetical protein; protein id: At1g61960.1 [... 57 5e-08
>ref|NP_568185.1| expressed protein; protein id: At5g07900.1, supported by cDNA:
22350., supported by cDNA: gi_13878064, supported by
cDNA: gi_17104654 [Arabidopsis thaliana]
gi|11281400|pir||T45615 hypothetical protein F13G24.100
- Arabidopsis thaliana gi|6562304|emb|CAB62602.1|
putative protein [Arabidopsis thaliana]
gi|10176724|dbj|BAB09954.1| gene_id:MXM12.14~unknown
protein [Arabidopsis thaliana]
gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein
[Arabidopsis thaliana] gi|17104655|gb|AAL34216.1|
unknown protein [Arabidopsis thaliana]
gi|21592327|gb|AAM64278.1| unknown [Arabidopsis
thaliana]
Length = 405
Score = 71.6 bits (174), Expect = 2e-12
Identities = 37/70 (52%), Positives = 49/70 (69%)
Frame = -2
Query: 433 VAGFPPVLGFSLEKRIIPRLSVIKVLKSKGLIKNDMHLSSFMCSSEEVFLKKFVINFQDD 254
+A P VL FSLEKRIIPR SV KVL S GL+K D L+S + E+VFL+K VI ++++
Sbjct: 332 IAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEE 391
Query: 253 APLLTDVYKG 224
P L ++Y G
Sbjct: 392 LPELMNLYLG 401
>ref|NP_197781.1| putative protein; protein id: At5g23930.1 [Arabidopsis thaliana]
gi|10176860|dbj|BAB10066.1|
gene_id:MRO11.3~pir||T02140~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 457
Score = 58.9 bits (141), Expect = 1e-08
Identities = 34/70 (48%), Positives = 42/70 (59%)
Frame = -2
Query: 433 VAGFPPVLGFSLEKRIIPRLSVIKVLKSKGLIKNDMHLSSFMCSSEEVFLKKFVINFQDD 254
VA P VLGFSLEK ++PR +VIK L S GLI +SS + S + FLK FV QD
Sbjct: 378 VASTPIVLGFSLEKFVLPRCNVIKALMSNGLIGEMPAISSVLTSPKLKFLKLFVEKHQDV 437
Query: 253 APLLTDVYKG 224
P L ++ G
Sbjct: 438 LPELNSIFTG 447
>ref|NP_176403.1| hypothetical protein; protein id: At1g62120.1 [Arabidopsis
thaliana]
Length = 437
Score = 58.5 bits (140), Expect = 2e-08
Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Frame = -2
Query: 433 VAGFPPVLGFSLEKRIIPRLSVIKVLKSKGLIKNDM-HLSSFMCSSEEVFLKKFVINFQD 257
VA P VLG+SLEKR +PR +VIKVL SKGL+++++ +SS + S+ EVFL +V D
Sbjct: 351 VASIPQVLGYSLEKRTVPRCNVIKVLISKGLLESELPPISSVLTSTSEVFLYMYV-RKHD 409
Query: 256 DAPLLTDV 233
D L+ ++
Sbjct: 410 DKQLVAEL 417
>ref|NP_176392.1| hypothetical protein; protein id: At1g62010.1 [Arabidopsis
thaliana] gi|7486686|pir||T02145 hypothetical protein
F8K4.20 - Arabidopsis thaliana gi|3367531|gb|AAC28516.1|
Strong similarity to gi|2160138 F19K23.6 gene product
from A. thaliana BAC gb|AC000375. [Arabidopsis thaliana]
gi|26450259|dbj|BAC42246.1| unknown protein [Arabidopsis
thaliana] gi|28827412|gb|AAO50550.1| unknown protein
[Arabidopsis thaliana]
Length = 415
Score = 57.8 bits (138), Expect = 3e-08
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Frame = -2
Query: 433 VAGFPPVLGFSLEKRIIPRLSVIKVLKSKGLIKNDM-HLSSFMCSSEEVFLKKFVINFQD 257
VA P VLG+SLEKR +PR +VIKVL SKGL+++++ +SS + S+ E FL +V + D
Sbjct: 329 VASIPQVLGYSLEKRTVPRCNVIKVLMSKGLLESELPPMSSVLTSTSESFLNLYV-SKHD 387
Query: 256 DAPLLTDV 233
D L+ ++
Sbjct: 388 DKQLVAEL 395
>ref|NP_176387.1| hypothetical protein; protein id: At1g61960.1 [Arabidopsis
thaliana] gi|7486682|pir||T02140 hypothetical protein
F8K4.15 - Arabidopsis thaliana gi|3367526|gb|AAC28511.1|
Strong similarity to gi|2160136 F19K23.4 gene product
from A. thaliana BAC gb|AC000375. [Arabidopsis thaliana]
Length = 457
Score = 57.0 bits (136), Expect = 5e-08
Identities = 29/73 (39%), Positives = 46/73 (62%), Gaps = 3/73 (4%)
Frame = -2
Query: 433 VAGFPPVLGFSLEKRIIPRLSVIKVLKSKGLIKNDMH---LSSFMCSSEEVFLKKFVINF 263
+ P V G+SLEKR +PR +VIK L SKGL+K+ +SS + S+++ FL+++V+
Sbjct: 381 LVSIPQVFGYSLEKRTVPRCNVIKTLISKGLMKDGSEAPPMSSVLTSTDQAFLRRYVMKH 440
Query: 262 QDDAPLLTDVYKG 224
AP L ++ G
Sbjct: 441 DKLAPELMAIFTG 453
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,893,769
Number of Sequences: 1393205
Number of extensions: 5524748
Number of successful extensions: 16080
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 15630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16065
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
