Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003700A_C03 KMC003700A_c03
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C96516 F16N3.15 [imported] - Arabidopsis thaliana gi|566881... 74 1e-12
ref|NP_175188.1| hypothetical protein; protein id: At1g47570.1 [... 74 1e-12
ref|NP_190996.1| TATA box binding protein (TBP) associated facto... 37 0.22
>pir||C96516 F16N3.15 [imported] - Arabidopsis thaliana
gi|5668816|gb|AAD46042.1|AC007519_27 F16N3.15
[Arabidopsis thaliana]
Length = 473
Score = 74.3 bits (181), Expect = 1e-12
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = -1
Query: 405 DCYQKLVSFLLYWFRISIPKRLLPPDASAREDCWYGYAC 289
DCY KLV FLLYWFRI++P+ LP D +AREDCWYGYAC
Sbjct: 409 DCYDKLVGFLLYWFRITLPRNHLPADVAAREDCWYGYAC 447
>ref|NP_175188.1| hypothetical protein; protein id: At1g47570.1 [Arabidopsis
thaliana]
Length = 298
Score = 74.3 bits (181), Expect = 1e-12
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = -1
Query: 405 DCYQKLVSFLLYWFRISIPKRLLPPDASAREDCWYGYAC 289
DCY KLV FLLYWFRI++P+ LP D +AREDCWYGYAC
Sbjct: 240 DCYDKLVGFLLYWFRITLPRNHLPADVAAREDCWYGYAC 278
>ref|NP_190996.1| TATA box binding protein (TBP) associated factor (TAF) -like protein;
protein id: At3g54280.1 [Arabidopsis thaliana]
gi|11358873|pir||T47587 TATA box binding protein (TBP)
associated factor (TAF)-like protein - Arabidopsis
thaliana gi|6822074|emb|CAB71002.1| TATA box binding
protein (TBP) associated factor (TAF)-like protein
[Arabidopsis thaliana]
Length = 2049
Score = 37.0 bits (84), Expect = 0.22
Identities = 15/26 (57%), Positives = 19/26 (72%)
Frame = -3
Query: 529 GGLVDLWDQSHYADESHVDQFLAKLN 452
G L +LWDQS Y +E ++ QFL KLN
Sbjct: 2023 GNLEELWDQSQYTEEYNLSQFLTKLN 2048
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,265,077
Number of Sequences: 1393205
Number of extensions: 11864032
Number of successful extensions: 27073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27066
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
