Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003693A_C01 KMC003693A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_237946.1| hypothetical protein XP_237946 [Rattus norvegicus] 33 1.7
ref|NP_476657.1| slouch CG6534-PA gi|123395|sp|P22807|HMN1_DROME... 33 2.9
ref|NP_501605.1| Predicted CDS, putative cytoplasmic protein, ne... 32 4.9
gb|EAA41679.1| GLP_385_37725_34387 [Giardia lamblia ATCC 50803] 32 6.4
dbj|BAA34118.1| ORF-3 [Human calicivirus isolates] 31 8.4
>ref|XP_237946.1| hypothetical protein XP_237946 [Rattus norvegicus]
Length = 90
Score = 33.5 bits (75), Expect = 1.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 121 VFLVTMDCIWFCLFWTLT*PSWIMFYDIMFL 29
V LV+ C+WF + WTL WI+F + FL
Sbjct: 29 VLLVSFACLWFLILWTL----WILFAVVCFL 55
>ref|NP_476657.1| slouch CG6534-PA gi|123395|sp|P22807|HMN1_DROME Homeobox protein
slou (S59/2) (Slouch protein) (Homeobox protein NK-1)
gi|103363|pir||A36664 S59/2 homeotic protein - fruit fly
(Drosophila melanogaster) gi|8531|emb|CAA39067.1| S59
protein [Drosophila melanogaster]
gi|23171898|gb|AAF55901.3| CG6534-PA [Drosophila
melanogaster] gi|227464|prf||1704199A S59 homeobox gene
Length = 659
Score = 32.7 bits (73), Expect = 2.9
Identities = 19/49 (38%), Positives = 27/49 (54%)
Frame = +2
Query: 251 RGLARPKQLQHPVEKGFQRGEILIIQAKILSTKMLFQQFGNHHQYQPHR 397
R LARP+ LQHP Q+ L+ + L+ QQ +HHQ+Q H+
Sbjct: 166 RHLARPEPLQHPHAALLQQHPHLLQNPQFLAAA---QQHMHHHQHQHHQ 211
>ref|NP_501605.1| Predicted CDS, putative cytoplasmic protein, nematode specific
[Caenorhabditis elegans] gi|7497493|pir||T19965
hypothetical protein C46C2.3 - Caenorhabditis elegans
gi|3874926|emb|CAA92592.1| Hypothetical protein C46C2.3
[Caenorhabditis elegans]
Length = 297
Score = 32.0 bits (71), Expect = 4.9
Identities = 26/92 (28%), Positives = 41/92 (44%)
Frame = +2
Query: 149 TKTLSKLQLKTYKF*TKQHSPDLRFLKTDQWASCRGLARPKQLQHPVEKGFQRGEILIIQ 328
TK ++ + + ++ +P+++ L D W SC L RP QL + V R I
Sbjct: 65 TKYAVDMETRGHLLVSRVPTPEMKLL--DTWDSCTALPRP-QLSNEVLASHWRSYI---- 117
Query: 329 AKILSTKMLFQQFGNHHQYQPHR*LRVAATRL 424
K L +++G Y PH L V A +L
Sbjct: 118 -KTLDVAARLEEYGKALAYFPHPMLLVDAVKL 148
>gb|EAA41679.1| GLP_385_37725_34387 [Giardia lamblia ATCC 50803]
Length = 1112
Score = 31.6 bits (70), Expect = 6.4
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 241 GFVPWLGKTQAASTSS-GEGFSKGRNPDYPSQDPLHENVVPTIWESPSISTP*IASCGCN 417
GF+ L KT T+ G G + G+ PS+D E++V + + + P I N
Sbjct: 612 GFIKKLSKTCIGQTNPPGSGSTSGQGSPNPSRDKRMEDIVLPVHKGVPLVLPSITRI-LN 670
Query: 418 TLVNLREQTTFSSWC 462
T + L + TF + C
Sbjct: 671 THLPLNQNETFETIC 685
>dbj|BAA34118.1| ORF-3 [Human calicivirus isolates]
Length = 212
Score = 31.2 bits (69), Expect = 8.4
Identities = 24/84 (28%), Positives = 34/84 (39%), Gaps = 19/84 (22%)
Frame = +1
Query: 196 KTAFSRSSLLKNRSVGFV----PWLGKTQAASTSSGEGFS---------------KGRNP 318
+ A SS RS GF+ P+ KT+A STS G + + +N
Sbjct: 104 RIAAPNSSATTLRSGGFMTVPMPFSSKTRAPSTSGSIGMTNPNYGDTMSRVSSWVQSQNS 163
Query: 319 DYPSQDPLHENVVPTIWESPSIST 390
S P H + T+W +P ST
Sbjct: 164 SVRSVSPFHRGALQTVWVTPPGST 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,353,380
Number of Sequences: 1393205
Number of extensions: 11513517
Number of successful extensions: 27816
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27808
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
