Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003691A_C01 KMC003691A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52337 phosphoprotein phosphatase (EC 3.1.3.16) 2C [importe... 59 2e-08
ref|NP_175238.1| protein phosphatase-2C, putative; protein id: A... 48 6e-05
ref|NP_188351.1| putative protein phosphatase; protein id: At3g1... 48 7e-05
dbj|BAB02728.1| protein phosphatase 2C-like protein [Arabidopsis... 48 7e-05
gb|AAM75346.1|AF520810_1 DNA-binding protein phosphatase 2C [Nic... 33 1.5
>pir||T52337 phosphoprotein phosphatase (EC 3.1.3.16) 2C [imported] - common ice
plant gi|3643085|gb|AAC36698.1| protein phosphatase-2C;
PP2C [Mesembryanthemum crystallinum]
Length = 359
Score = 59.3 bits (142), Expect = 2e-08
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = -2
Query: 509 HTSDNLTVIVICLSSVETIVESCPPQRRRFRACSLSEEARNRLRSLLEGN 360
HT DNLTVI++C SS++ E P+ RRFR CSLS EA + LRSLLEGN
Sbjct: 308 HTIDNLTVIIVCFSSIDHQREQTGPRPRRFR-CSLSAEALSSLRSLLEGN 356
>ref|NP_175238.1| protein phosphatase-2C, putative; protein id: At1g48040.1
[Arabidopsis thaliana]
gi|8778520|gb|AAF79528.1|AC023673_16 F21D18.27
[Arabidopsis thaliana]
gi|12323084|gb|AAG51521.1|AC051631_1 protein
phosphatase-2C, putative; 42154-43770 [Arabidopsis
thaliana]
Length = 377
Score = 48.1 bits (113), Expect = 6e-05
Identities = 27/48 (56%), Positives = 36/48 (74%)
Frame = -2
Query: 506 TSDNLTVIVICLSSVETIVESCPPQRRRFRACSLSEEARNRLRSLLEG 363
+SDN+TVIVIC SSV + + PQRRR R C +S+EAR RL+++L G
Sbjct: 332 SSDNMTVIVICFSSVPSSPKQ--PQRRRLRFC-VSDEARARLQAMLAG 376
>ref|NP_188351.1| putative protein phosphatase; protein id: At3g17250.1 [Arabidopsis
thaliana]
Length = 378
Score = 47.8 bits (112), Expect = 7e-05
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = -2
Query: 506 TSDNLTVIVICLSSVETIVESCPPQRRRFRACSLSEEARNRLRSLLEG 363
+SDN+TV+VIC SS S PQRRR R C +S+EAR RL+++LEG
Sbjct: 338 SSDNVTVVVICFSS------SPAPQRRRIRFC-VSDEARARLQTMLEG 378
>dbj|BAB02728.1| protein phosphatase 2C-like protein [Arabidopsis thaliana]
Length = 422
Score = 47.8 bits (112), Expect = 7e-05
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = -2
Query: 506 TSDNLTVIVICLSSVETIVESCPPQRRRFRACSLSEEARNRLRSLLEG 363
+SDN+TV+VIC SS S PQRRR R C +S+EAR RL+++LEG
Sbjct: 382 SSDNVTVVVICFSS------SPAPQRRRIRFC-VSDEARARLQTMLEG 422
>gb|AAM75346.1|AF520810_1 DNA-binding protein phosphatase 2C [Nicotiana tabacum]
Length = 384
Score = 33.5 bits (75), Expect = 1.5
Identities = 23/48 (47%), Positives = 28/48 (57%), Gaps = 2/48 (4%)
Frame = -2
Query: 500 DNLTVIVICLSS--VETIVESCPPQRRRFRACSLSEEARNRLRSLLEG 363
DNLTV+++C S TIV QR R R C +S E LRSLL+G
Sbjct: 342 DNLTVVMVCFHSEPPPTIVF----QRSRIRKC-ISAEGLQNLRSLLDG 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,703,479
Number of Sequences: 1393205
Number of extensions: 6964242
Number of successful extensions: 14088
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 13634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14079
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
