Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003688A_C01 KMC003688A_c01
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65226.1| putative translation initiation factor eIF-2, gam... 133 2e-30
ref|NP_171913.1| translation initiation factor eIF-2 gamma subun... 133 2e-30
pir||T04935 translation initiation factor eIF-2 gamma chain T9A2... 115 4e-25
ref|NP_179462.1| translation initiation factor eIF-2 gamma subun... 108 8e-23
gb|AAH43966.1| Similar to eukaryotic translation initiation fact... 103 1e-21
>gb|AAM65226.1| putative translation initiation factor eIF-2, gamma subunit
[Arabidopsis thaliana]
Length = 465
Score = 133 bits (334), Expect = 2e-30
Identities = 64/82 (78%), Positives = 73/82 (88%)
Frame = -1
Query: 641 ERQEKVAKLTKGEPLLLNIGSMSAGGKVIAVKNDLAKLQLTTPVCTSKGEKIALSRRVKK 462
E+Q KV+KLTKGE L+LNIGSMS G KV+ VK DLAKLQLT PVCTSKGEK+ALSRRV+K
Sbjct: 383 EKQGKVSKLTKGEILMLNIGSMSTGAKVVGVKVDLAKLQLTAPVCTSKGEKVALSRRVEK 442
Query: 461 LWRLIGWGQIQAGITLDVPPAP 396
WRLIGWGQIQAG T++VPP+P
Sbjct: 443 HWRLIGWGQIQAGTTIEVPPSP 464
>ref|NP_171913.1| translation initiation factor eIF-2 gamma subunit, putative;
protein id: At1g04170.1, supported by cDNA: 37699.,
supported by cDNA: gi_13549161, supported by cDNA:
gi_20260147 [Arabidopsis thaliana]
gi|7428967|pir||T00956 translation initiation factor
eIF-2 gamma chain F20D22.6 - Arabidopsis thaliana
gi|3142294|gb|AAC16745.1| Strong similarity to
initiation factor eIF-2, gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene.
[Arabidopsis thaliana]
gi|13549162|gb|AAK29674.1|AF353097_1 protein synthesis
initiation factor eIF2 gamma [Arabidopsis thaliana]
gi|20260148|gb|AAM12972.1| strong similarity to
initiation factor eIF-2, gb|U37354 from S [Arabidopsis
thaliana] gi|25083696|gb|AAN72106.1| strong similarity
to initiation factor eIF-2, gb|U37354 from S
[Arabidopsis thaliana]
Length = 465
Score = 133 bits (334), Expect = 2e-30
Identities = 64/82 (78%), Positives = 73/82 (88%)
Frame = -1
Query: 641 ERQEKVAKLTKGEPLLLNIGSMSAGGKVIAVKNDLAKLQLTTPVCTSKGEKIALSRRVKK 462
E+Q KV+KLTKGE L+LNIGSMS G KV+ VK DLAKLQLT PVCTSKGEK+ALSRRV+K
Sbjct: 383 EKQGKVSKLTKGEILMLNIGSMSTGAKVVGVKVDLAKLQLTAPVCTSKGEKVALSRRVEK 442
Query: 461 LWRLIGWGQIQAGITLDVPPAP 396
WRLIGWGQIQAG T++VPP+P
Sbjct: 443 HWRLIGWGQIQAGTTIEVPPSP 464
>pir||T04935 translation initiation factor eIF-2 gamma chain T9A21.180 -
Arabidopsis thaliana gi|2832707|emb|CAA16805.1|
translation initiation factor eIF-2 gamma chain-like
protein [Arabidopsis thaliana]
gi|7268626|emb|CAB78835.1| translation initiation factor
eIF-2 gamma chain-like protein [Arabidopsis thaliana]
Length = 471
Score = 115 bits (289), Expect = 4e-25
Identities = 57/82 (69%), Positives = 67/82 (81%)
Frame = -1
Query: 641 ERQEKVAKLTKGEPLLLNIGSMSAGGKVIAVKNDLAKLQLTTPVCTSKGEKIALSRRVKK 462
E+Q KV+KLTK E L++NIGSMS G KVI VK D+ KLQLT+PVCT+ GEK+ALSRRV +
Sbjct: 389 EKQMKVSKLTKEEILMVNIGSMSTGAKVIGVKKDMVKLQLTSPVCTTIGEKVALSRRVDR 448
Query: 461 LWRLIGWGQIQAGITLDVPPAP 396
WRLIG GQI AG T+DVPP P
Sbjct: 449 HWRLIGKGQIMAGTTIDVPPPP 470
>ref|NP_179462.1| translation initiation factor eIF-2 gamma subunit, putative;
protein id: At2g18720.1 [Arabidopsis thaliana]
gi|25299563|pir||G84567 hypothetical protein At2g18720
[imported] - Arabidopsis thaliana
gi|4185138|gb|AAD08941.1| putative translation
initiation factor eIF-2B gamma subunit [Arabidopsis
thaliana]
Length = 465
Score = 108 bits (269), Expect = 8e-23
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = -1
Query: 641 ERQEKVAKLTKGEPLLLNIGSMSAGGKVIAVKNDLAKLQLTTPVCTSKGEKIALSRRVKK 462
ERQ +V+KL KGE L+LNIGSMS G VI VK D+ K+ LT PVCTS GEK+A+SRRV +
Sbjct: 381 ERQMRVSKLVKGEILMLNIGSMSTGAMVIGVKKDMVKVNLTLPVCTSIGEKVAISRRVDR 440
Query: 461 LWRLIGWGQIQAGITLDVPPAPAL 390
WRLIG GQI+AG T+ +P P+L
Sbjct: 441 HWRLIGRGQIEAGTTIFIPSPPSL 464
>gb|AAH43966.1| Similar to eukaryotic translation initiation factor 2, subunit 3,
structural gene X-linked [Xenopus laevis]
Length = 472
Score = 103 bits (258), Expect = 1e-21
Identities = 50/76 (65%), Positives = 62/76 (80%)
Frame = -1
Query: 641 ERQEKVAKLTKGEPLLLNIGSMSAGGKVIAVKNDLAKLQLTTPVCTSKGEKIALSRRVKK 462
++ KV KL+K E L++NIGS+S GG+V AVK DLAK+ LT PVCT GEKIALSRRV+K
Sbjct: 390 KKAAKVQKLSKNEVLMVNIGSLSTGGRVNAVKADLAKIVLTNPVCTEVGEKIALSRRVEK 449
Query: 461 LWRLIGWGQIQAGITL 414
WRLIGWGQI+ G+T+
Sbjct: 450 HWRLIGWGQIRRGVTI 465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,248,148
Number of Sequences: 1393205
Number of extensions: 10594692
Number of successful extensions: 23127
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 22599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23119
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
