Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003686A_C01 KMC003686A_c01
(741 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL61820.1| chitin-inducible gibberellin-responsive protein [... 140 2e-32
gb|AAL61821.1| chitin-inducible gibberellin-responsive protein [... 120 3e-26
gb|AAM08829.1|AC113335_9 Putative SCARECROW gene regulator-like ... 119 5e-26
gb|AAN41283.1| putative scarecrow protein [Arabidopsis thaliana] 113 2e-24
ref|NP_175475.1| scarecrow-like protein; protein id: At1g50600.1... 113 2e-24
>gb|AAL61820.1| chitin-inducible gibberellin-responsive protein [Oryza sativa
(japonica cultivar-group)]
Length = 572
Score = 140 bits (353), Expect = 2e-32
Identities = 65/80 (81%), Positives = 72/80 (89%)
Frame = -3
Query: 736 VVNVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSSYVNSVIKNLLRCYSEHYTLIEK 557
+VN+IACEGK+RVERHEL GKWKSRLTMAGFR PLSSYVNSVI+ LL CYS+ YTL EK
Sbjct: 493 IVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIRKLLACYSDKYTLDEK 552
Query: 556 DGAMLLGWKNRSLISASAWH 497
DGAMLLGW++R LISASAWH
Sbjct: 553 DGAMLLGWRSRKLISASAWH 572
>gb|AAL61821.1| chitin-inducible gibberellin-responsive protein [Oryza sativa
(japonica cultivar-group)] gi|27817840|dbj|BAC55608.1|
OJ1127_E01.12 [Oryza sativa (japonica cultivar-group)]
Length = 544
Score = 120 bits (300), Expect = 3e-26
Identities = 53/81 (65%), Positives = 69/81 (84%)
Frame = -3
Query: 739 DVVNVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSSYVNSVIKNLLRCYSEHYTLIE 560
++VN+IACEG+ER ER+E FGKWK+RLTMAGFR SPLSS VN+ I+ LL+ YS++Y L E
Sbjct: 464 EIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPLSSLVNATIRTLLQSYSDNYKLAE 523
Query: 559 KDGAMLLGWKNRSLISASAWH 497
+DGA+ LGWK+R L+ +SAWH
Sbjct: 524 RDGALYLGWKSRPLVVSSAWH 544
>gb|AAM08829.1|AC113335_9 Putative SCARECROW gene regulator-like [Oryza sativa (japonica
cultivar-group)]
Length = 524
Score = 119 bits (298), Expect = 5e-26
Identities = 55/80 (68%), Positives = 64/80 (79%)
Frame = -3
Query: 739 DVVNVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSSYVNSVIKNLLRCYSEHYTLIE 560
D+VN+IACEG ERVERHE+FGKWK+RLTMAGFR PLSS VNS IK LL Y+ Y L E
Sbjct: 444 DIVNLIACEGAERVERHEVFGKWKARLTMAGFRPYPLSSVVNSTIKTLLHTYNSFYRLEE 503
Query: 559 KDGAMLLGWKNRSLISASAW 500
+DG + LGWKNR L+ +SAW
Sbjct: 504 RDGVLYLGWKNRVLVVSSAW 523
>gb|AAN41283.1| putative scarecrow protein [Arabidopsis thaliana]
Length = 597
Score = 113 bits (283), Expect = 2e-24
Identities = 53/80 (66%), Positives = 63/80 (78%)
Frame = -3
Query: 739 DVVNVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSSYVNSVIKNLLRCYSEHYTLIE 560
+VVN+IACEG ER ERHE GKW+SR MAGF+ PLSSYVN+ IK LL YSE YTL E
Sbjct: 517 EVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTLEE 576
Query: 559 KDGAMLLGWKNRSLISASAW 500
+DGA+ LGWKN+ LI++ AW
Sbjct: 577 RDGALYLGWKNQPLITSCAW 596
>ref|NP_175475.1| scarecrow-like protein; protein id: At1g50600.1, supported by cDNA:
gi_14334475, supported by cDNA: gi_14517551, supported
by cDNA: gi_17979104 [Arabidopsis thaliana]
gi|25405382|pir||E96542 scarecrow-like protein
[imported] - Arabidopsis thaliana
gi|9454552|gb|AAF87875.1|AC012561_8 Putative
transcription factor [Arabidopsis thaliana]
gi|12322334|gb|AAG51190.1|AC079279_11 scarecrow-like
protein [Arabidopsis thaliana]
Length = 526
Score = 113 bits (283), Expect = 2e-24
Identities = 53/80 (66%), Positives = 63/80 (78%)
Frame = -3
Query: 739 DVVNVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSSYVNSVIKNLLRCYSEHYTLIE 560
+VVN+IACEG ER ERHE GKW+SR MAGF+ PLSSYVN+ IK LL YSE YTL E
Sbjct: 446 EVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTLEE 505
Query: 559 KDGAMLLGWKNRSLISASAW 500
+DGA+ LGWKN+ LI++ AW
Sbjct: 506 RDGALYLGWKNQPLITSCAW 525
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 591,010,118
Number of Sequences: 1393205
Number of extensions: 11666190
Number of successful extensions: 24340
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 23540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24255
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
