Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003682A_C01 KMC003682A_c01
(988 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191649.1| fasciclin-like arabinogalactan-protein (FLA10);... 266 2e-78
gb|AAK55685.1|AF378882_1 AT3g60900/T4C21_310 [Arabidopsis thaliana] 263 1e-77
ref|NP_566043.1| fasciclin-like arabinogalactan-protein (FLA8); ... 255 1e-75
gb|AAM66074.1| endosperm-specific protein-like protein [Arabidop... 254 2e-75
gb|AAG24276.1|AF195889_1 fasciclin-like arabinogalactan protein ... 254 2e-75
>ref|NP_191649.1| fasciclin-like arabinogalactan-protein (FLA10); protein id:
At3g60900.1, supported by cDNA: 37272. [Arabidopsis
thaliana] gi|11281906|pir||T47901 endosperm specific
protein-like - Arabidopsis thaliana
gi|7329700|emb|CAB82694.1| endosperm specific
protein-like [Arabidopsis thaliana]
gi|21593224|gb|AAM65173.1| endosperm specific
protein-like [Arabidopsis thaliana]
Length = 422
Score = 266 bits (680), Expect(2) = 2e-78
Identities = 133/213 (62%), Positives = 168/213 (78%), Gaps = 2/213 (0%)
Frame = -1
Query: 886 ASLVLSNGLIKTFQSAADKGLTIFAPSDEAFKARGVPDLSKLTNAEVVSLLQYHAVAKYL 707
A+L++S+G+IKTF+S +KGLT+FAPSDEAFKARGVPDL+ LT AEVVSLL+YHA+A+Y
Sbjct: 204 ANLLVSSGVIKTFESTVEKGLTVFAPSDEAFKARGVPDLTNLTQAEVVSLLEYHALAEYK 263
Query: 706 PVGSLKTTKDPISTLATNGAGKFEYTVSVAGDSVTLHTGVDSSRVADTVLDSTPLSIYSV 527
P GSLKT KD ISTLATNGAGK++ T S +GD V LHTGV SR+ADTV+D TP+ I++V
Sbjct: 264 PKGSLKTNKDAISTLATNGAGKYDLTTSTSGDEVILHTGVGPSRLADTVVDETPVVIFTV 323
Query: 526 DSVLLPPELFAKSPSPAPAPEPASAPSPAPASGPSPASAPSPLPASPPAPAGE--TPDGA 353
D+VLLP ELF KS SPAPAPEP SAP+P PA PSP APSP ASPPAP + +P+GA
Sbjct: 324 DNVLLPAELFGKSSSPAPAPEPVSAPTPTPAKSPSPVEAPSPTAASPPAPPVDESSPEGA 383
Query: 352 PADAPSTAAERSTSGKSAGVTVKASVILTVTVT 254
P+D+P+++ +++ K+A V A + T VT
Sbjct: 384 PSDSPTSS--ENSNAKNAAFHVNAPALFTALVT 414
Score = 50.1 bits (118), Expect(2) = 2e-78
Identities = 24/35 (68%), Positives = 30/35 (85%), Gaps = 2/35 (5%)
Frame = -2
Query: 987 ISAPIIAPGVLSAPPPSSS--VNLTALIEKAGCKT 889
I+APIIAPG+L+AP PSS+ N+T L+EKAGCKT
Sbjct: 168 INAPIIAPGILTAPAPSSAGVSNITGLLEKAGCKT 202
>gb|AAK55685.1|AF378882_1 AT3g60900/T4C21_310 [Arabidopsis thaliana]
Length = 410
Score = 263 bits (672), Expect(2) = 1e-77
Identities = 131/209 (62%), Positives = 166/209 (78%), Gaps = 2/209 (0%)
Frame = -1
Query: 886 ASLVLSNGLIKTFQSAADKGLTIFAPSDEAFKARGVPDLSKLTNAEVVSLLQYHAVAKYL 707
A+L++S+G+IKTF+S +KGLT+FAPSDEAFKARGVPDL+ LT AEVVSLL+YHA+A+Y
Sbjct: 204 ANLLVSSGVIKTFESTVEKGLTVFAPSDEAFKARGVPDLTNLTQAEVVSLLEYHALAEYK 263
Query: 706 PVGSLKTTKDPISTLATNGAGKFEYTVSVAGDSVTLHTGVDSSRVADTVLDSTPLSIYSV 527
P GSLKT KD ISTLATNGAGK++ T S +GD V LHTGV SR+ADTV+D TP+ I++V
Sbjct: 264 PKGSLKTNKDAISTLATNGAGKYDLTTSTSGDEVILHTGVGPSRLADTVVDETPVVIFTV 323
Query: 526 DSVLLPPELFAKSPSPAPAPEPASAPSPAPASGPSPASAPSPLPASPPAPAGE--TPDGA 353
D+VLLP ELF KS SPAPAPEP SAP+P PA PSP APSP ASPPAP + +P+GA
Sbjct: 324 DNVLLPAELFGKSSSPAPAPEPVSAPTPTPAKSPSPVEAPSPTAASPPAPPVDESSPEGA 383
Query: 352 PADAPSTAAERSTSGKSAGVTVKASVILT 266
P+D+P+++ +++ K+A V A + T
Sbjct: 384 PSDSPTSS--ENSNAKNAAFHVNAPALFT 410
Score = 50.1 bits (118), Expect(2) = 1e-77
Identities = 24/35 (68%), Positives = 30/35 (85%), Gaps = 2/35 (5%)
Frame = -2
Query: 987 ISAPIIAPGVLSAPPPSSS--VNLTALIEKAGCKT 889
I+APIIAPG+L+AP PSS+ N+T L+EKAGCKT
Sbjct: 168 INAPIIAPGILTAPAPSSAGVSNITGLLEKAGCKT 202
>ref|NP_566043.1| fasciclin-like arabinogalactan-protein (FLA8); protein id:
At2g45470.1, supported by cDNA: 7709., supported by
cDNA: gi_20453146 [Arabidopsis thaliana]
gi|25349350|pir||H84890 hypothetical protein At2g45470
[imported] - Arabidopsis thaliana
gi|2583108|gb|AAB82617.1| expressed protein [Arabidopsis
thaliana] gi|20453147|gb|AAM19815.1| At2g45470/F4L23.2
[Arabidopsis thaliana] gi|23506197|gb|AAN31110.1|
At2g45470/F4L23.2 [Arabidopsis thaliana]
Length = 420
Score = 255 bits (651), Expect(2) = 1e-75
Identities = 131/220 (59%), Positives = 171/220 (77%), Gaps = 3/220 (1%)
Frame = -1
Query: 886 ASLVLSNGLIKTFQSAADKGLTIFAPSDEAFKARGVPDLSKLTNAEVVSLLQYHAVAKYL 707
A+L++S+G++KT++SA +KGLT+FAPSDEAFKA GVPDL+KLT AEVVSLL+YHA+A+Y
Sbjct: 203 ANLLVSSGVLKTYESAVEKGLTVFAPSDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEYK 262
Query: 706 PVGSLKTTKDPISTLATNGAGKFEYTVSVAGDSVTLHTGVDSSRVADTVLDSTPLSIYSV 527
P GSLKT K+ ISTLATNGAGKF+ T S +GD V LHTGV SR+ADTVLD+TP+ I++V
Sbjct: 263 PKGSLKTNKNNISTLATNGAGKFDLTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTV 322
Query: 526 DSVLLPPELF--AKSPSPAPAPEPASAPSPAPASGPSPASAPSPLPASPPA-PAGETPDG 356
D+VLLP ELF +KSPSPAPAPEP +AP+ PSPA APSP ASPPA P E+P+
Sbjct: 323 DNVLLPAELFGKSKSPSPAPAPEPVTAPT------PSPADAPSPTAASPPAPPTDESPES 376
Query: 355 APADAPSTAAERSTSGKSAGVTVKASVILTVTVTALSAFV 236
AP+D+P+ +A ++ + GV+ + VT+ A++ V
Sbjct: 377 APSDSPTGSANSKSANAAVGVSTPSLFTALVTIAAIAVSV 416
Score = 51.6 bits (122), Expect(2) = 1e-75
Identities = 25/34 (73%), Positives = 30/34 (87%), Gaps = 1/34 (2%)
Frame = -2
Query: 987 ISAPIIAPGVLSAPPPSSSV-NLTALIEKAGCKT 889
I APIIAPGVL+AP PS+S+ N+T L+EKAGCKT
Sbjct: 168 IDAPIIAPGVLTAPAPSASLSNITGLLEKAGCKT 201
>gb|AAM66074.1| endosperm-specific protein-like protein [Arabidopsis thaliana]
Length = 420
Score = 254 bits (650), Expect(2) = 2e-75
Identities = 131/220 (59%), Positives = 171/220 (77%), Gaps = 3/220 (1%)
Frame = -1
Query: 886 ASLVLSNGLIKTFQSAADKGLTIFAPSDEAFKARGVPDLSKLTNAEVVSLLQYHAVAKYL 707
A+L++S+G++KT++SA +KGLT+FAPSDEAFKA GVPDL+KLT AEVVSLL+YHA+A+Y
Sbjct: 203 ANLLVSSGVLKTYESAVEKGLTVFAPSDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEYK 262
Query: 706 PVGSLKTTKDPISTLATNGAGKFEYTVSVAGDSVTLHTGVDSSRVADTVLDSTPLSIYSV 527
P GSLKT K+ ISTLATNGAGKF+ T S +GD V LHTGV SR+ADTVLD+TP+ I++V
Sbjct: 263 PKGSLKTNKNNISTLATNGAGKFDLTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTV 322
Query: 526 DSVLLPPELF--AKSPSPAPAPEPASAPSPAPASGPSPASAPSPLPASPPA-PAGETPDG 356
D+VLLP ELF +KSPSPAPAPEP +AP+ PSPA APSP ASPPA P E+P+
Sbjct: 323 DNVLLPAELFGKSKSPSPAPAPEPVTAPT------PSPADAPSPTAASPPAPPTDESPES 376
Query: 355 APADAPSTAAERSTSGKSAGVTVKASVILTVTVTALSAFV 236
AP+D+P+ +A ++ + GV+ + VT+ A++ V
Sbjct: 377 APSDSPTGSANSKSANAAVGVSTPSLFTALVTIAAVAVSV 416
Score = 51.6 bits (122), Expect(2) = 2e-75
Identities = 25/34 (73%), Positives = 30/34 (87%), Gaps = 1/34 (2%)
Frame = -2
Query: 987 ISAPIIAPGVLSAPPPSSSV-NLTALIEKAGCKT 889
I APIIAPGVL+AP PS+S+ N+T L+EKAGCKT
Sbjct: 168 IDAPIIAPGVLTAPAPSASLSNITGLLEKAGCKT 201
>gb|AAG24276.1|AF195889_1 fasciclin-like arabinogalactan protein FLA8 [Arabidopsis thaliana]
Length = 323
Score = 254 bits (650), Expect(2) = 2e-75
Identities = 131/220 (59%), Positives = 171/220 (77%), Gaps = 3/220 (1%)
Frame = -1
Query: 886 ASLVLSNGLIKTFQSAADKGLTIFAPSDEAFKARGVPDLSKLTNAEVVSLLQYHAVAKYL 707
A+L++S+G++KT++SA +KGLT+FAPSDEAFKA GVPDL+KLT AEVVSLL+YHA+A+Y
Sbjct: 106 ANLLVSSGVLKTYESAVEKGLTVFAPSDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEYK 165
Query: 706 PVGSLKTTKDPISTLATNGAGKFEYTVSVAGDSVTLHTGVDSSRVADTVLDSTPLSIYSV 527
P GSLKT K+ ISTLATNGAGKF+ T S +GD V LHTGV SR+ADTVLD+TP+ I++V
Sbjct: 166 PKGSLKTNKNNISTLATNGAGKFDLTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTV 225
Query: 526 DSVLLPPELF--AKSPSPAPAPEPASAPSPAPASGPSPASAPSPLPASPPA-PAGETPDG 356
D+VLLP ELF +KSPSPAPAPEP +AP+ PSPA APSP ASPPA P E+P+
Sbjct: 226 DNVLLPAELFGKSKSPSPAPAPEPVTAPT------PSPADAPSPTAASPPAPPTDESPES 279
Query: 355 APADAPSTAAERSTSGKSAGVTVKASVILTVTVTALSAFV 236
AP+D+P+ +A ++ + GV+ + VT+ A++ V
Sbjct: 280 APSDSPTGSANSKSANAAVGVSTPSLFTALVTIAAVAVSV 319
Score = 51.6 bits (122), Expect(2) = 2e-75
Identities = 25/34 (73%), Positives = 30/34 (87%), Gaps = 1/34 (2%)
Frame = -2
Query: 987 ISAPIIAPGVLSAPPPSSSV-NLTALIEKAGCKT 889
I APIIAPGVL+AP PS+S+ N+T L+EKAGCKT
Sbjct: 71 IDAPIIAPGVLTAPAPSASLSNITGLLEKAGCKT 104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 867,605,742
Number of Sequences: 1393205
Number of extensions: 23674026
Number of successful extensions: 664567
Number of sequences better than 10.0: 12790
Number of HSP's better than 10.0 without gapping: 153145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414543
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 56851631560
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
