Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003677A_C01 KMC003677A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180688.1| putative ARP2/3 protein complex subunit p41; pr... 126 1e-28
ref|NP_180648.1| putative ARP2/3 protein complex subunit p41; pr... 125 4e-28
gb|AAC99777.1| p41-Arc [Dictyostelium discoideum] 50 1e-05
gb|EAA35040.1| hypothetical protein [Neurospora crassa] 40 0.014
gb|AAH41267.1| Similar to actin related protein 2/3 complex, sub... 38 0.088
>ref|NP_180688.1| putative ARP2/3 protein complex subunit p41; protein id:
At2g31300.1, supported by cDNA: gi_16612304 [Arabidopsis
thaliana] gi|25408146|pir||A84719 probable ARP2/3
protein complex subunit p41 [imported] - Arabidopsis
thaliana gi|4432825|gb|AAD20675.1| putative ARP2/3
protein complex subunit p41 [Arabidopsis thaliana]
gi|16612305|gb|AAL27513.1|AF439845_1 At2g31300/F16D14.14
[Arabidopsis thaliana] gi|23308333|gb|AAN18136.1|
At2g31300/F16D14.14 [Arabidopsis thaliana]
Length = 378
Score = 126 bits (317), Expect = 1e-28
Identities = 67/105 (63%), Positives = 78/105 (73%), Gaps = 2/105 (1%)
Frame = -1
Query: 536 VFAADERGIWSFIRYLGERNTASSPSRYGSQFSEAFGKFYG-QSKHGVSNDTVDTSRTRG 360
VFAAD+ GIWSFIRY+GE+ ASS S Y SQFSEAFGKFYG QSK +ND D +RG
Sbjct: 273 VFAADDTGIWSFIRYIGEKKAASSGSSYSSQFSEAFGKFYGSQSKSTTANDASD---SRG 329
Query: 359 AVHENCINSIIPLGEHGA-LTRRFSTSGLDGRIVLWDLENEQDIL 228
VH+N I SI+PLG+ G+ RFSTSGLDG+I +WDLEN Q L
Sbjct: 330 GVHDNSITSIVPLGKGGSPKVMRFSTSGLDGKIAIWDLENMQQEL 374
>ref|NP_180648.1| putative ARP2/3 protein complex subunit p41; protein id:
At2g30910.1 [Arabidopsis thaliana]
gi|25408109|pir||B84714 probable ARP2/3 protein complex
subunit p41 [imported] - Arabidopsis thaliana
gi|3201618|gb|AAC20725.1| putative ARP2/3 protein
complex subunit p41 [Arabidopsis thaliana]
gi|28416663|gb|AAO42862.1| At2g30910 [Arabidopsis
thaliana]
Length = 378
Score = 125 bits (313), Expect = 4e-28
Identities = 65/105 (61%), Positives = 80/105 (75%), Gaps = 3/105 (2%)
Frame = -1
Query: 536 VFAADERGIWSFIRYLGERNTASSPSRYGSQFSEAFGKFYG-QSKHGVSNDTVDTSRTRG 360
VFA+D+ GIWSFIRY+GE+ ASS S Y SQFSEAFGKFYG QSK +N D S +RG
Sbjct: 273 VFASDDTGIWSFIRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKSTTAN---DASESRG 329
Query: 359 AVHENCINSIIPLGEHGA-LTRRFSTSGLDGRIVLWDLEN-EQDI 231
VH+NCINSI+ L + G+ RFSTSGLDG++ +WDLEN EQ++
Sbjct: 330 GVHDNCINSIVSLSKAGSPKVMRFSTSGLDGKVAIWDLENMEQEL 374
>gb|AAC99777.1| p41-Arc [Dictyostelium discoideum]
Length = 369
Score = 50.4 bits (119), Expect = 1e-05
Identities = 31/84 (36%), Positives = 42/84 (49%)
Frame = -1
Query: 497 RYLGERNTASSPSRYGSQFSEAFGKFYGQSKHGVSNDTVDTSRTRGAVHENCINSIIPLG 318
+Y GE + AS + A F + G S + D T VH+NCI SI+P
Sbjct: 278 KYSGEMDKASEGGAAAGSETSARKLFQNKVDLGESK-SADKKLT--TVHQNCITSIVPFK 334
Query: 317 EHGALTRRFSTSGLDGRIVLWDLE 246
G + FSTSGLDG IV+W ++
Sbjct: 335 SVGGVVSDFSTSGLDGNIVVWHVK 358
>gb|EAA35040.1| hypothetical protein [Neurospora crassa]
Length = 368
Score = 40.4 bits (93), Expect = 0.014
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -1
Query: 356 VHENCINSIIPLGEHGALTRRFSTSGLDGRIVLW 255
VH+N + + P E G +FS+SG+DGR+V+W
Sbjct: 333 VHQNTVTMLRPFEESGGRVTKFSSSGVDGRVVIW 366
>gb|AAH41267.1| Similar to actin related protein 2/3 complex, subunit 1A, 41kDa
[Xenopus laevis]
Length = 370
Score = 37.7 bits (86), Expect = 0.088
Identities = 24/104 (23%), Positives = 43/104 (41%)
Frame = -1
Query: 536 VFAADERGIWSFIRYLGERNTASSPSRYGSQFSEAFGKFYGQSKHGVSNDTVDTSRTRGA 357
+F DE G +F+ L P + + A +F K + D T T
Sbjct: 271 LFTYDEHGSLTFVSKL------DIPKQSTQRNISAMERFRNMDKRATTEDRNTTLET--- 321
Query: 356 VHENCINSIIPLGEHGALTRRFSTSGLDGRIVLWDLENEQDILE 225
+H+N I + R+F T+G+DG + +WD + + ++
Sbjct: 322 LHQNSITQVSIYDGDKTECRKFCTTGIDGAMTIWDFKTLESYIQ 365
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,225,360
Number of Sequences: 1393205
Number of extensions: 9908244
Number of successful extensions: 25284
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 24390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25265
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
