Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003662A_C01 KMC003662A_c01
(425 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_066230.2| cytochrome b [Taenia crassiceps] gi|12248320|gb... 36 0.13
ref|NP_113331.1| hypothetical protein [Guillardia theta] gi|2539... 32 1.4
sp|Q9TKS1|MATK_ABRPR Maturase K (Intron maturase) gi|5817734|gb|... 31 3.1
ref|NP_282205.1| putative integral membrane protein [Campylobact... 31 3.1
ref|NP_504255.1| Predicted CDS, putative membrane protein family... 31 4.1
>ref|NP_066230.2| cytochrome b [Taenia crassiceps] gi|12248320|gb|AAG13170.2|
cytochrome b [Taenia crassiceps]
Length = 357
Score = 35.8 bits (81), Expect = 0.13
Identities = 28/102 (27%), Positives = 51/102 (49%)
Frame = -2
Query: 361 LVLLLRRLSNLYAAMYSENSSALWMTGSKIKLVKRINLNLVGNDVIYMHVDAYN*DFF*I 182
+V+L+RR NL + + S W G + + I + L G + ++++ YN FF +
Sbjct: 1 MVILIRR--NLIDLPINYSVSYYWSVGFVLSMFMIIQI-LTGVLLSFLYIGDYNNSFFMV 57
Query: 181 ANLLDFSFFIYCGGVSFLIVMEQINSIVCYVLRFYKVLYNIY 56
+L + SFFI+C L I + ++L F +L ++Y
Sbjct: 58 MSLSNDSFFIWC-----LRYWHIIGVNLLFILIFVHMLRSLY 94
>ref|NP_113331.1| hypothetical protein [Guillardia theta] gi|25396779|pir||H90094
hypothetical protein orf446 [imported] - Guillardia
theta nucleomorph gi|13794513|gb|AAK39888.1|AF165818_96
hypothetical protein [Guillardia theta]
Length = 446
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = -2
Query: 394 FKILVQI*STSLVLLLRRLSNLYAAMYSENSSALWMTGSKIKLVKRINLNLVGNDVIYMH 215
FK ++ + + L N + +YSEN++ L+ T + + L K N N N V
Sbjct: 46 FKEIIDLPLSKYFFKLFYAKNYFNLIYSENTNKLFKTKNLMSLAKNENYNYFRNHVF--- 102
Query: 214 VDAYN*DFF*IANLLDFSF 158
++N +FF ++ ++F +
Sbjct: 103 -RSFNLNFFSYSDAINFGY 120
>sp|Q9TKS1|MATK_ABRPR Maturase K (Intron maturase) gi|5817734|gb|AAD52877.1|AF142705_1
maturase-like protein [Abrus precatorius]
Length = 508
Score = 31.2 bits (69), Expect = 3.1
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = -2
Query: 400 FNFKILVQI*STSLVLLLRRLSNLYAAM-YSENSSALWMTGSKIKLVKRINLNLVGNDVI 224
F+ + + +V + L ++++ + E+ + S I++ I+L ++ +
Sbjct: 106 FSLQFSSSLEGAEIVKFYKNLRSIHSIFPFFEDKLIYFNYESDIRIPYPIHLEILVQILR 165
Query: 223 YMHVDAYN*DFF*IANLLDFSFFIYCGGVSFLIVMEQINSIVCYVLRFYKVLYNIYI 53
Y D FF +LL F FF YC S + + I++ RF+ LYN+Y+
Sbjct: 166 YWMKDV---SFF---HLLRFFFFYYCNWNSLITPKKLISTFSKSNPRFFLFLYNLYV 216
>ref|NP_282205.1| putative integral membrane protein [Campylobacter jejuni]
gi|11346941|pir||D81308 probable integral membrane
protein Cj1055c [imported] - Campylobacter jejuni
(strain NCTC 11168) gi|6968491|emb|CAB73311.1| putative
integral membrane protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
Length = 657
Score = 31.2 bits (69), Expect = 3.1
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Frame = -2
Query: 157 FIYCGGVSFLIVMEQINS-IVCYVLRFYKVLYNIYIIVIINMC 32
F+ CG +S + +IN+ +V Y FY + ++YIIV+ +C
Sbjct: 64 FLLCGFLSLIFSNIKINNKLVIYSKNFYFIFSSVYIIVLSCLC 106
>ref|NP_504255.1| Predicted CDS, putative membrane protein family member, with at
least 2 transmembrane domains, nematode specific
[Caenorhabditis elegans] gi|7503195|pir||T29734
hypothetical protein F41F3.6 - Caenorhabditis elegans
gi|1280076|gb|AAA97985.1| Hypothetical protein F41F3.6
[Caenorhabditis elegans]
Length = 250
Score = 30.8 bits (68), Expect = 4.1
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 178 NLLDFSFFIYCGGVSFLIVMEQINSIVCY-VLRFY 77
N+ DF FFI+ V +L+++ IN + Y +L+FY
Sbjct: 102 NVDDFGFFIFLFSVGYLVLLYVINLLTFYQILKFY 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,114,007
Number of Sequences: 1393205
Number of extensions: 6574722
Number of successful extensions: 13394
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13369
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
