Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003661A_C01 KMC003661A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566275.1| expressed protein; protein id: At3g06190.1, sup... 179 3e-44
gb|AAM97116.1| putative protein [Arabidopsis thaliana] gi|273119... 176 2e-43
ref|NP_197401.1| putative protein; protein id: At5g19000.1 [Arab... 176 2e-43
dbj|BAC20790.1| contains ESTs AU056959(S21019),AU056960(S21019)~... 172 2e-42
gb|AAO72687.1| zinc finger POZ domain protein [Oryza sativa (jap... 119 4e-26
>ref|NP_566275.1| expressed protein; protein id: At3g06190.1, supported by cDNA:
gi_15028068, supported by cDNA: gi_20259304 [Arabidopsis
thaliana] gi|6862923|gb|AAF30312.1|AC018907_12 unknown
protein [Arabidopsis thaliana]
gi|15028069|gb|AAK76565.1| unknown protein [Arabidopsis
thaliana] gi|20259305|gb|AAM14388.1| unknown protein
[Arabidopsis thaliana]
Length = 406
Score = 179 bits (453), Expect = 3e-44
Identities = 87/117 (74%), Positives = 99/117 (84%)
Frame = -2
Query: 627 AAADRYGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFKLKAVCLKFIASSENLRAV 448
AAADRY LERLR +CE+ LCE ++INTVATTLALAEQHHCF+LKA CLKFIA ENL+AV
Sbjct: 289 AAADRYALERLRTICESKLCEGISINTVATTLALAEQHHCFQLKAACLKFIALPENLKAV 348
Query: 447 MQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMCKHRNEANLDGSDINGRRVKQRL 277
M+TDGF+YLKESCPS+L+ELLEYVAR +EHS HR E DG D+NGRRVKQRL
Sbjct: 349 METDGFDYLKESCPSLLSELLEYVARLSEHSLTSSGHRKELFADGCDLNGRRVKQRL 405
>gb|AAM97116.1| putative protein [Arabidopsis thaliana] gi|27311975|gb|AAO00953.1|
putative protein [Arabidopsis thaliana]
Length = 407
Score = 176 bits (446), Expect = 2e-43
Identities = 86/117 (73%), Positives = 98/117 (83%)
Frame = -2
Query: 627 AAADRYGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFKLKAVCLKFIASSENLRAV 448
AAADRY LERL+ +CE+ LCE VAINTVATTLALAEQHHC +LKAVCLKF+A ENL+AV
Sbjct: 290 AAADRYALERLKAICESKLCEGVAINTVATTLALAEQHHCLQLKAVCLKFVALPENLKAV 349
Query: 447 MQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMCKHRNEANLDGSDINGRRVKQRL 277
MQTDGF+YLKESCPS+LTELL+YVAR +EHS + HR E DG D +GRRVK RL
Sbjct: 350 MQTDGFDYLKESCPSLLTELLQYVARLSEHSVIVSGHRKEIFADGCDASGRRVKPRL 406
>ref|NP_197401.1| putative protein; protein id: At5g19000.1 [Arabidopsis thaliana]
Length = 442
Score = 176 bits (446), Expect = 2e-43
Identities = 86/117 (73%), Positives = 98/117 (83%)
Frame = -2
Query: 627 AAADRYGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFKLKAVCLKFIASSENLRAV 448
AAADRY LERL+ +CE+ LCE VAINTVATTLALAEQHHC +LKAVCLKF+A ENL+AV
Sbjct: 325 AAADRYALERLKAICESKLCEGVAINTVATTLALAEQHHCLQLKAVCLKFVALPENLKAV 384
Query: 447 MQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMCKHRNEANLDGSDINGRRVKQRL 277
MQTDGF+YLKESCPS+LTELL+YVAR +EHS + HR E DG D +GRRVK RL
Sbjct: 385 MQTDGFDYLKESCPSLLTELLQYVARLSEHSVIVSGHRKEIFADGCDASGRRVKPRL 441
>dbj|BAC20790.1| contains ESTs AU056959(S21019),AU056960(S21019)~similar to
Arabidopsis thaliana chromosome 5, At5g19000~unknown
protein [Oryza sativa (japonica cultivar-group)]
Length = 434
Score = 172 bits (437), Expect = 2e-42
Identities = 84/117 (71%), Positives = 98/117 (82%)
Frame = -2
Query: 627 AAADRYGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFKLKAVCLKFIASSENLRAV 448
AAADRY LERL+L+CE LCEDVAINTVA TLALAEQHHC++LK VCL+F+A ENL+AV
Sbjct: 319 AAADRYALERLKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVCLRFVALPENLKAV 378
Query: 447 MQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMCKHRNEANLDGSDINGRRVKQRL 277
MQTDGF+YL++SCPS+LTELLEYVA+ EHS C + NE LDG D NGRRVK R+
Sbjct: 379 MQTDGFDYLQQSCPSLLTELLEYVAKVGEHSVSPCLYSNEV-LDGGDANGRRVKPRI 434
>gb|AAO72687.1| zinc finger POZ domain protein [Oryza sativa (japonica
cultivar-group)]
Length = 183
Score = 119 bits (297), Expect = 4e-26
Identities = 62/119 (52%), Positives = 87/119 (73%), Gaps = 2/119 (1%)
Frame = -2
Query: 627 AAADRYGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFKLKAVCLKFIASSENLRAV 448
AAADRY L RLRL+CE+ LC+ +++N+VATTLALA++HH +LK+VCLKF A ENL AV
Sbjct: 67 AAADRYELPRLRLLCESYLCKHISVNSVATTLALADRHHAMELKSVCLKFAA--ENLSAV 124
Query: 447 MQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMCKHRNEAN--LDGSDINGRRVKQRL 277
++TDGF+YLK++CP++ +E+L VA E K ++ DG D +GRRV+ R+
Sbjct: 125 IRTDGFDYLKDNCPALQSEILRTVAGCEEECSSGGKSQSVWGQLSDGGDTSGRRVRPRV 183
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,426,887
Number of Sequences: 1393205
Number of extensions: 9459225
Number of successful extensions: 28499
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 27550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28449
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
