Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003660A_C01 KMC003660A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL58221.1|AC090882_24 putative splicing regulatory protein [... 75 6e-13
ref|NP_567536.1| RRM-containing protein; protein id: At4g17720.1... 41 0.009
pir||C71447 hypothetical protein - Arabidopsis thaliana gi|22451... 41 0.009
ref|NP_199498.1| RRM-containing protein; protein id: At5g46870.1... 40 0.016
gb|EAA16762.1| hypothetical protein [Plasmodium yoelii yoelii] 36 0.39
>gb|AAL58221.1|AC090882_24 putative splicing regulatory protein [Oryza sativa (japonica
cultivar-group)]
Length = 284
Score = 75.1 bits (183), Expect = 6e-13
Identities = 34/68 (50%), Positives = 51/68 (75%)
Frame = -3
Query: 567 AFTAIAKAAEDVSTMTKEKLEQAEVEKKDTIYNERKGSVDEYAQMHLDESSDWGPAVVPV 388
AF + KAA D+S+MTK+K+++AE E+K ++ ER G V +YA++HLDE S W PAV+P+
Sbjct: 214 AFGMVTKAAGDMSSMTKDKVDRAEEERKAIMWEERNGLVSDYAKIHLDEPSSWEPAVLPL 273
Query: 387 NSDNDSKL 364
S ++ KL
Sbjct: 274 ESVDEQKL 281
>ref|NP_567536.1| RRM-containing protein; protein id: At4g17720.1, supported by cDNA:
39922. [Arabidopsis thaliana] gi|21593540|gb|AAM65507.1|
putative splicing regulatory protein [Arabidopsis
thaliana] gi|28393291|gb|AAO42073.1| putative
RRM-containing protein [Arabidopsis thaliana]
gi|28827694|gb|AAO50691.1| putative RRM-containing
protein [Arabidopsis thaliana]
Length = 313
Score = 41.2 bits (95), Expect = 0.009
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = -3
Query: 567 AFTAIAKAAEDVSTMTKEKLEQAEVEKKDTIYNERKGSVDEYAQMHLDES 418
AF +AKAAE+V KEK+ AE E K + VDE+A++HL ES
Sbjct: 218 AFNKVAKAAEEVGQKAKEKVGMAEEEDKRKV-------VDEFARVHLSES 260
>pir||C71447 hypothetical protein - Arabidopsis thaliana
gi|2245131|emb|CAB10552.1| hypothetical protein
[Arabidopsis thaliana] gi|7268525|emb|CAB78775.1|
hypothetical protein [Arabidopsis thaliana]
Length = 321
Score = 41.2 bits (95), Expect = 0.009
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = -3
Query: 567 AFTAIAKAAEDVSTMTKEKLEQAEVEKKDTIYNERKGSVDEYAQMHLDES 418
AF +AKAAE+V KEK+ AE E K + VDE+A++HL ES
Sbjct: 226 AFNKVAKAAEEVGQKAKEKVGMAEEEDKRKV-------VDEFARVHLSES 268
>ref|NP_199498.1| RRM-containing protein; protein id: At5g46870.1 [Arabidopsis
thaliana] gi|8809670|dbj|BAA97221.1|
gene_id:MSD23.5~pir||C71447~similar to unknown protein
[Arabidopsis thaliana]
Length = 293
Score = 40.4 bits (93), Expect = 0.016
Identities = 29/68 (42%), Positives = 39/68 (56%)
Frame = -3
Query: 567 AFTAIAKAAEDVSTMTKEKLEQAEVEKKDTIYNERKGSVDEYAQMHLDESSDWGPAVVPV 388
AF ++KAAE+V KEK+ AE E++ E+K VDE A +HL ES P +
Sbjct: 220 AFNRVSKAAEEVGQKAKEKVGLAEEEEE-----EKKKVVDEVAIVHLTES----PKALD- 269
Query: 387 NSDNDSKL 364
S+ DSKL
Sbjct: 270 QSEQDSKL 277
>gb|EAA16762.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1523
Score = 35.8 bits (81), Expect = 0.39
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 110 CELKGEVKEKLKSMVKTNKNELFYMNVDCI*EEHL*DTPLQSP*TINKTFHNTANLQQLK 289
CE KG +K+K +KTN+++ NV I E + S T+N F N +NL++ K
Sbjct: 704 CEKKGTIKQKGNENIKTNRDKKITENVKKISESKFYNDNSNS--TMNSNFSNYSNLKKKK 761
Query: 290 IEK 298
+K
Sbjct: 762 KKK 764
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,709,067
Number of Sequences: 1393205
Number of extensions: 8897267
Number of successful extensions: 21123
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21099
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
