Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003659A_C01 KMC003659A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563983.1| unknown protein; protein id: At1g15860.1 [Arabi... 139 3e-32
pir||A86293 F7H2.19 protein - Arabidopsis thaliana gi|8927664|gb... 139 3e-32
ref|XP_235807.1| similar to RIKEN cDNA 4833420K19 [Mus musculus]... 67 2e-10
ref|NP_115675.1| hypothetical protein MGC2714 [Homo sapiens] gi|... 67 2e-10
ref|XP_134610.1| RIKEN cDNA 4833420K19 [Mus musculus] gi|2395622... 67 2e-10
>ref|NP_563983.1| unknown protein; protein id: At1g15860.1 [Arabidopsis thaliana]
Length = 225
Score = 139 bits (349), Expect = 3e-32
Identities = 62/85 (72%), Positives = 72/85 (83%)
Frame = -1
Query: 574 KQTSIDTESICELLALVLGSTFPAQVNLFVEYLKAQADYKVINMDQWMGFFRFCNEISFP 395
KQ SID E+IC+LL +V+GSTF AQV+ FVEYLK Q DYKVINMDQWMG +RFCNEISFP
Sbjct: 139 KQKSIDIETICQLLEIVMGSTFRAQVDYFVEYLKIQNDYKVINMDQWMGLYRFCNEISFP 198
Query: 394 SLNDYDPDLAWPLILDNFVDWAASK 320
+ DY+P+LAWPLILDNFV+W K
Sbjct: 199 DMGDYNPELAWPLILDNFVEWIQEK 223
>pir||A86293 F7H2.19 protein - Arabidopsis thaliana
gi|8927664|gb|AAF82155.1|AC034256_19 Contains similarity
to RP42 from Mus musculus gb|AF198092 and is a member of
the Transposase PF|00872 and UTP-glucose-1-phosphate
uridylyltransferase PF|01704 families. EST gb|AI998363
comes from this gene. [Arabidopsis thaliana]
Length = 237
Score = 139 bits (349), Expect = 3e-32
Identities = 62/85 (72%), Positives = 72/85 (83%)
Frame = -1
Query: 574 KQTSIDTESICELLALVLGSTFPAQVNLFVEYLKAQADYKVINMDQWMGFFRFCNEISFP 395
KQ SID E+IC+LL +V+GSTF AQV+ FVEYLK Q DYKVINMDQWMG +RFCNEISFP
Sbjct: 151 KQKSIDIETICQLLEIVMGSTFRAQVDYFVEYLKIQNDYKVINMDQWMGLYRFCNEISFP 210
Query: 394 SLNDYDPDLAWPLILDNFVDWAASK 320
+ DY+P+LAWPLILDNFV+W K
Sbjct: 211 DMGDYNPELAWPLILDNFVEWIQEK 235
>ref|XP_235807.1| similar to RIKEN cDNA 4833420K19 [Mus musculus] [Rattus norvegicus]
Length = 283
Score = 66.6 bits (161), Expect = 2e-10
Identities = 33/80 (41%), Positives = 52/80 (64%)
Frame = -1
Query: 571 QTSIDTESICELLALVLGSTFPAQVNLFVEYLKAQADYKVINMDQWMGFFRFCNEISFPS 392
Q S+D ++ +LAL+LG T+P ++F +YL+ Q+ Y+V+N DQW F +
Sbjct: 200 QRSLDIDTAKSMLALLLGRTWPL-FSVFYQYLE-QSKYRVMNKDQWYNVLEFSRTVH-AD 256
Query: 391 LNDYDPDLAWPLILDNFVDW 332
L++YD D AWP++LD FV+W
Sbjct: 257 LSNYDEDGAWPVLLDEFVEW 276
>ref|NP_115675.1| hypothetical protein MGC2714 [Homo sapiens]
gi|13278798|gb|AAH04169.1|AAH04169 Similar to RIKEN cDNA
3110001A18 gene [Homo sapiens]
gi|16552549|dbj|BAB71336.1| unnamed protein product
[Homo sapiens]
Length = 237
Score = 66.6 bits (161), Expect = 2e-10
Identities = 33/80 (41%), Positives = 52/80 (64%)
Frame = -1
Query: 571 QTSIDTESICELLALVLGSTFPAQVNLFVEYLKAQADYKVINMDQWMGFFRFCNEISFPS 392
Q S+D ++ +LAL+LG T+P ++F +YL+ Q+ Y+V+N DQW F +
Sbjct: 154 QRSLDIDTAKSMLALLLGRTWPL-FSVFYQYLE-QSKYRVMNKDQWYNVLEFSRTVH-AD 210
Query: 391 LNDYDPDLAWPLILDNFVDW 332
L++YD D AWP++LD FV+W
Sbjct: 211 LSNYDEDGAWPVLLDEFVEW 230
>ref|XP_134610.1| RIKEN cDNA 4833420K19 [Mus musculus] gi|23956220|ref|NP_084051.1|
RIKEN cDNA 4833420K19 [Mus musculus]
gi|12851502|dbj|BAB29066.1| unnamed protein product [Mus
musculus] gi|18044876|gb|AAH20089.1| RIKEN cDNA
3110001A18 gene [Mus musculus]
Length = 237
Score = 66.6 bits (161), Expect = 2e-10
Identities = 33/80 (41%), Positives = 52/80 (64%)
Frame = -1
Query: 571 QTSIDTESICELLALVLGSTFPAQVNLFVEYLKAQADYKVINMDQWMGFFRFCNEISFPS 392
Q S+D ++ +LAL+LG T+P ++F +YL+ Q+ Y+V+N DQW F +
Sbjct: 154 QRSLDIDTAKSMLALLLGRTWPL-FSVFYQYLE-QSKYRVMNKDQWYNVLEFSRTVH-AD 210
Query: 391 LNDYDPDLAWPLILDNFVDW 332
L++YD D AWP++LD FV+W
Sbjct: 211 LSNYDEDGAWPVLLDEFVEW 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,697,338
Number of Sequences: 1393205
Number of extensions: 9397143
Number of successful extensions: 17972
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 17524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17931
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
