Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003657A_C01 KMC003657A_c01
(394 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG54011.1|AF224598_3 NADH dehydrogenase subunit 4L [Avahi la... 31 4.3
gb|EAA23014.1| hypothetical protein [Plasmodium yoelii yoelii] 30 5.6
gb|AAK70537.1|AF224621_3 NADH dehydrogenase subunit 4L [Mirza co... 30 7.3
gb|AAK70533.1|AF224620_3 NADH dehydrogenase subunit 4L [Allocebu... 30 7.3
ref|NP_066498.1| NADH dehydrogenase subunit 1 [Naegleria gruberi... 30 7.3
>gb|AAG54011.1|AF224598_3 NADH dehydrogenase subunit 4L [Avahi laniger]
Length = 98
Score = 30.8 bits (68), Expect = 4.3
Identities = 18/44 (40%), Positives = 28/44 (62%), Gaps = 1/44 (2%)
Frame = +2
Query: 188 RNHTNSSL-CIILITLNYFSLSTIIRINSKLTMILMSKEGLIIY 316
R+H SSL C+ + L+ F+LST+I +N LTM M L+++
Sbjct: 23 RSHLMSSLLCLEGMMLSLFTLSTLIILNMHLTMSFMMPILLLVF 66
>gb|EAA23014.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 732
Score = 30.4 bits (67), Expect = 5.6
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 238 LLSFYYHQNK*QINNDSDEQGRTNHLSM 321
+ S Y H+NK NNDSD++ + NH++M
Sbjct: 543 MFSSYTHKNK---NNDSDQEIKNNHINM 567
>gb|AAK70537.1|AF224621_3 NADH dehydrogenase subunit 4L [Mirza coquereli]
gi|14587513|gb|AAK70541.1|AF224622_3 NADH dehydrogenase
subunit 4L [Mirza coquereli]
gi|14587520|gb|AAK70545.1|AF224623_3 NADH dehydrogenase
subunit 4L [Mirza coquereli]
Length = 98
Score = 30.0 bits (66), Expect = 7.3
Identities = 18/44 (40%), Positives = 28/44 (62%), Gaps = 1/44 (2%)
Frame = +2
Query: 188 RNHTNSSL-CIILITLNYFSLSTIIRINSKLTMILMSKEGLIIY 316
R+H SSL C+ + L+ F LST+I +N +LTM M L+++
Sbjct: 23 RSHMMSSLLCLEGMMLSMFILSTLIILNVQLTMSFMMPILLLVF 66
>gb|AAK70533.1|AF224620_3 NADH dehydrogenase subunit 4L [Allocebus trichotis]
Length = 98
Score = 30.0 bits (66), Expect = 7.3
Identities = 18/44 (40%), Positives = 28/44 (62%), Gaps = 1/44 (2%)
Frame = +2
Query: 188 RNHTNSSL-CIILITLNYFSLSTIIRINSKLTMILMSKEGLIIY 316
R+H SSL C+ + L+ F LST+I N++LTM M L+++
Sbjct: 23 RSHMMSSLLCLEGMMLSMFILSTLIISNTQLTMSFMMPIMLLVF 66
>ref|NP_066498.1| NADH dehydrogenase subunit 1 [Naegleria gruberi]
gi|10444210|gb|AAG17776.1|AF288092_1 NADH dehydrogenase
subunit 1 [Naegleria gruberi]
Length = 327
Score = 30.0 bits (66), Expect = 7.3
Identities = 13/42 (30%), Positives = 26/42 (60%)
Frame = -2
Query: 285 IIVNLLFILMIVEREK*LRVIRMIHNEEFVWFLF*KPIHQLW 160
+ + +FI+MI+ + +I ++ N+E+VWF+ P+ LW
Sbjct: 152 VCIGFVFIVMIMMTDS-FNLIDVVINQEYVWFIL--PLFPLW 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,378,364
Number of Sequences: 1393205
Number of extensions: 4885254
Number of successful extensions: 8197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8197
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
