Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003652A_C01 KMC003652A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566609.1| expressed protein; protein id: At3g18420.1, sup... 83 3e-15
ref|NP_568104.1| chloroplast lumen common protein family; protei... 39 0.064
pir||T48280 hypothetical protein T22P11.180 - Arabidopsis thalia... 37 0.19
gb|AAM66986.1| unknown [Arabidopsis thaliana] 36 0.42
ref|NP_565860.1| chloroplast lumen common protein family; protei... 36 0.42
>ref|NP_566609.1| expressed protein; protein id: At3g18420.1, supported by cDNA:
23733., supported by cDNA: gi_14335157, supported by
cDNA: gi_18655374 [Arabidopsis thaliana]
gi|11994105|dbj|BAB01108.1|
gb|AAC98059.1~gene_id:MYF24.14~similar to unknown
protein [Arabidopsis thaliana]
gi|14335158|gb|AAK59859.1| AT3g18420/MYF24_13
[Arabidopsis thaliana] gi|18655375|gb|AAL76143.1|
AT3g18420/MYF24_13 [Arabidopsis thaliana]
gi|21592430|gb|AAM64381.1| unknown [Arabidopsis
thaliana]
Length = 316
Score = 82.8 bits (203), Expect = 3e-15
Identities = 39/46 (84%), Positives = 44/46 (94%)
Frame = -2
Query: 590 RGMIYSLLDKNDEAKVQFAKYRELSPKKFEVDGYLRSPLSRIKVFG 453
RGMIYSLLDKN EAK QFAKYRELSPKKFEV+GYLR+PLS++K+FG
Sbjct: 266 RGMIYSLLDKNVEAKEQFAKYRELSPKKFEVEGYLRTPLSKMKLFG 311
>ref|NP_568104.1| chloroplast lumen common protein family; protein id: At5g02590.1,
supported by cDNA: 13930. [Arabidopsis thaliana]
gi|21553360|gb|AAM62453.1| unknown [Arabidopsis
thaliana]
Length = 326
Score = 38.5 bits (88), Expect = 0.064
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = -2
Query: 590 RGMIYSLLDKNDEAKVQFAKYRELSPKKFEVDGYL-RSPLSRIKVFGTDQ 444
+G+IY+L+ K DEA+ QFA++R L P+ YL + L+ K+F +Q
Sbjct: 277 QGLIYTLMKKKDEAEKQFAEFRRLVPENHPYKEYLDANVLNTNKLFAKNQ 326
>pir||T48280 hypothetical protein T22P11.180 - Arabidopsis thaliana
gi|7413648|emb|CAB85996.1| putative protein [Arabidopsis
thaliana]
Length = 407
Score = 37.0 bits (84), Expect = 0.19
Identities = 16/35 (45%), Positives = 24/35 (67%)
Frame = -2
Query: 590 RGMIYSLLDKNDEAKVQFAKYRELSPKKFEVDGYL 486
+G+IY+L+ K DEA+ QFA++R L P+ YL
Sbjct: 277 QGLIYTLMKKKDEAEKQFAEFRRLVPENHPYKEYL 311
>gb|AAM66986.1| unknown [Arabidopsis thaliana]
Length = 333
Score = 35.8 bits (81), Expect = 0.42
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -2
Query: 590 RGMIYSLLDKNDEAKVQFAKYRELSPKKFEVDGYLRSPLSRIKVF 456
+G+IY++L K +EA+ QF K+R L PK Y + K+F
Sbjct: 279 QGIIYTVLKKENEAEKQFEKFRRLVPKNHPYREYFMDNMVASKLF 323
>ref|NP_565860.1| chloroplast lumen common protein family; protein id: At2g37400.1,
supported by cDNA: 9001. [Arabidopsis thaliana]
gi|25408548|pir||C84792 hypothetical protein At2g37400
[imported] - Arabidopsis thaliana
gi|4056493|gb|AAC98059.1| chloroplast lumen common
protein family [Arabidopsis thaliana]
Length = 333
Score = 35.8 bits (81), Expect = 0.42
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -2
Query: 590 RGMIYSLLDKNDEAKVQFAKYRELSPKKFEVDGYLRSPLSRIKVF 456
+G+IY++L K +EA+ QF K+R L PK Y + K+F
Sbjct: 279 QGIIYTVLKKENEAEKQFEKFRRLVPKNHPYREYFMDNMVASKLF 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,218,139
Number of Sequences: 1393205
Number of extensions: 10191132
Number of successful extensions: 18779
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18775
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
