Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003650A_C01 KMC003650A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176020.1| hypothetical protein; protein id: At1g56240.1 [... 68 6e-11
ref|NP_176021.1| hypothetical protein; protein id: At1g56250.1 [... 68 6e-11
ref|NP_563837.1| Expressed protein; protein id: At1g09155.1, sup... 65 4e-10
pir||G86223 hypothetical protein [imported] - Arabidopsis thalia... 65 4e-10
gb|AAM64609.1| phloem-specific lectin PP2-like protein [Arabidop... 65 4e-10
>ref|NP_176020.1| hypothetical protein; protein id: At1g56240.1 [Arabidopsis
thaliana] gi|25366251|pir||A96604 hypothetical protein
F14G9.15 [imported] - Arabidopsis thaliana
gi|12321750|gb|AAG50910.1|AC069159_11 hypothetical
protein [Arabidopsis thaliana]
Length = 284
Score = 67.8 bits (164), Expect = 6e-11
Identities = 28/53 (52%), Positives = 39/53 (72%)
Frame = -1
Query: 455 QRPAVRSDGWLEIEMGEFSNSSLEDEELQMSVIEIQGYSSKSGLILEGIEVRP 297
+ P R DGWLEIE+GEF ED+E+ MS+ E++GY K G++++GIEVRP
Sbjct: 228 REPKARDDGWLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVIDGIEVRP 280
>ref|NP_176021.1| hypothetical protein; protein id: At1g56250.1 [Arabidopsis
thaliana] gi|25366254|pir||B96604 hypothetical protein
F14G9.14 [imported] - Arabidopsis thaliana
gi|12321747|gb|AAG50907.1|AC069159_8 hypothetical
protein [Arabidopsis thaliana]
Length = 282
Score = 67.8 bits (164), Expect = 6e-11
Identities = 27/54 (50%), Positives = 40/54 (74%)
Frame = -1
Query: 455 QRPAVRSDGWLEIEMGEFSNSSLEDEELQMSVIEIQGYSSKSGLILEGIEVRPK 294
+ P R DGW+EIE+GEF ED+E+ M++ E++GY K G++++GIEVRPK
Sbjct: 228 REPKCRDDGWMEIELGEFETREGEDDEVNMTLTEVKGYQLKGGILIDGIEVRPK 281
>ref|NP_563837.1| Expressed protein; protein id: At1g09155.1, supported by cDNA:
31022. [Arabidopsis thaliana]
Length = 289
Score = 65.1 bits (157), Expect = 4e-10
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Frame = -1
Query: 455 QRPAVRSDGWLEIEMGEFSNSSLE---DEELQMSVIEIQGYSSKSGLILEGIEVRPK 294
+ P VR DGW+EIE+GEF S E D+E+ MS+ E++GY K G+ ++GIEVRPK
Sbjct: 224 REPEVRDDGWMEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 280
>pir||G86223 hypothetical protein [imported] - Arabidopsis thaliana
gi|3249107|gb|AAC24090.1| Contains similarity to
phloem-specific lectin PP2 gb|Z17331 from Cucubita
maxima. [Arabidopsis thaliana]
Length = 288
Score = 65.1 bits (157), Expect = 4e-10
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Frame = -1
Query: 455 QRPAVRSDGWLEIEMGEFSNSSLE---DEELQMSVIEIQGYSSKSGLILEGIEVRPK 294
+ P VR DGW+EIE+GEF S E D+E+ MS+ E++GY K G+ ++GIEVRPK
Sbjct: 223 REPEVRDDGWMEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 279
>gb|AAM64609.1| phloem-specific lectin PP2-like protein [Arabidopsis thaliana]
Length = 288
Score = 65.1 bits (157), Expect = 4e-10
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Frame = -1
Query: 455 QRPAVRSDGWLEIEMGEFSNSSLE---DEELQMSVIEIQGYSSKSGLILEGIEVRPK 294
+ P VR DGW+EIE+GEF S E D+E+ MS+ E++GY K G+ ++GIEVRPK
Sbjct: 223 REPEVRDDGWMEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 279
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,006,985
Number of Sequences: 1393205
Number of extensions: 7186953
Number of successful extensions: 26179
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 19549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24097
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
