Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003649A_C01 KMC003649A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563820.1| expressed protein; protein id: At1g08500.1, sup... 73 3e-12
gb|AAM61545.1| unknown [Arabidopsis thaliana] 73 3e-12
dbj|BAB17752.1| hypothetical protein~similar to Arabidopsis thal... 47 2e-04
gb|AAO51312.1| similar to Dictyostelium discoideum (Slime mold).... 38 0.12
ref|XP_224765.1| similar to hypothetical protein BC008207 [Homo ... 37 0.34
>ref|NP_563820.1| expressed protein; protein id: At1g08500.1, supported by cDNA:
123625., supported by cDNA: gi_13877538, supported by
cDNA: gi_17978706 [Arabidopsis thaliana]
gi|25407046|pir||A86218 protein T27G7.18 [imported] -
Arabidopsis thaliana gi|3395758|gb|AAC32929.1| unknown
[Arabidopsis thaliana]
gi|6664312|gb|AAF22894.1|AC006932_11 T27G7.18
[Arabidopsis thaliana]
gi|13877539|gb|AAK43847.1|AF370470_1 Unknown protein
[Arabidopsis thaliana] gi|17978707|gb|AAL47347.1|
unknown protein [Arabidopsis thaliana]
Length = 228
Score = 73.2 bits (178), Expect = 3e-12
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = -2
Query: 688 QHFKINVTYGQGLPKSLRSPSEDSPSPA-SPVSGDDDAAPDTIVPSHFSHPKGETDDDED 512
QHF INVT+GQGLP S +P P+ S SGDD+ APDTIVP++F HPK + D
Sbjct: 140 QHFMINVTHGQGLPDSSSPDDAAAPGPSESSQSGDDEVAPDTIVPANFDHPK--DIESAD 197
Query: 511 GDKTSDSAKEKSSSVSMSMYAQLHNKLYVA 422
DK S K SS+ S++ + L+ +
Sbjct: 198 DDKEVHSKKSSSSTTKTSLFCFVFMGLFAS 227
>gb|AAM61545.1| unknown [Arabidopsis thaliana]
Length = 228
Score = 73.2 bits (178), Expect = 3e-12
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = -2
Query: 688 QHFKINVTYGQGLPKSLRSPSEDSPSPA-SPVSGDDDAAPDTIVPSHFSHPKGETDDDED 512
QHF INVT+GQGLP S +P P+ S SGDD+ APDTIVP++F HPK + D
Sbjct: 140 QHFMINVTHGQGLPDSSSPDDAAAPGPSESSQSGDDEVAPDTIVPANFDHPK--DIESAD 197
Query: 511 GDKTSDSAKEKSSSVSMSMYAQLHNKLYVA 422
DK S K SS+ S++ + L+ +
Sbjct: 198 DDKEVHSKKSSSSTTKTSLFCFVFMGLFAS 227
>dbj|BAB17752.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 1,
T27G7.18 [Oryza sativa (japonica cultivar-group)]
gi|13873022|dbj|BAB44126.1| B1085F09.24 [Oryza sativa
(japonica cultivar-group)]
Length = 251
Score = 47.4 bits (111), Expect = 2e-04
Identities = 25/64 (39%), Positives = 33/64 (51%)
Frame = -2
Query: 688 QHFKINVTYGQGLPKSLRSPSEDSPSPASPVSGDDDAAPDTIVPSHFSHPKGETDDDEDG 509
Q F I V +GQGLP LR P+ ++P P+S DA P FSHPK ++ D
Sbjct: 154 QRFAIAVAHGQGLPPDLRPPAAEAPGPSSSAGAAADAPP----TFDFSHPKNVSNSPADT 209
Query: 508 DKTS 497
T+
Sbjct: 210 STTA 213
>gb|AAO51312.1| similar to Dictyostelium discoideum (Slime mold). Gp138
Length = 660
Score = 38.1 bits (87), Expect = 0.12
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = -2
Query: 634 SPSEDSPSPASPVSGDDDAAPDTIVPSHF---SHPKGETDDDEDGDKTSDSAKEKSSSVS 464
S S DS S S S + + D+ S S ++D D D D SDS+++ SSS
Sbjct: 583 SSSNDSSSDVSSNSSKNRDSSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSSEKPSSSSK 642
Query: 463 MSMYAQLHNKLYVALILL 410
+S++ ++ +++ ++LL
Sbjct: 643 LSLFISINTFIFMIILLL 660
>ref|XP_224765.1| similar to hypothetical protein BC008207 [Homo sapiens] [Rattus
norvegicus]
Length = 617
Score = 36.6 bits (83), Expect = 0.34
Identities = 21/59 (35%), Positives = 26/59 (43%)
Frame = -2
Query: 634 SPSEDSPSPASPVSGDDDAAPDTIVPSHFSHPKGETDDDEDGDKTSDSAKEKSSSVSMS 458
+PS D+ P SG APD P +D D D + SDS+ SSS S S
Sbjct: 50 APSSDAGENPPPPSGPCATAPDAAEPLPELQDSDSSDSDSDSETDSDSSSSSSSSSSSS 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,696,670
Number of Sequences: 1393205
Number of extensions: 13766684
Number of successful extensions: 55760
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 46946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53921
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
