Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003644A_C01 KMC003644A_c01
(469 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA90634.1| ESTs AU029388(E30287),D49277(S16474) correspond ... 37 0.10
ref|NP_191708.1| polygalacturonase, putative; protein id: At3g61... 33 1.1
ref|NP_326277.1| unknown; predicted coding region [Mycoplasma pu... 32 4.3
>dbj|BAA90634.1| ESTs AU029388(E30287),D49277(S16474) correspond to a region of the
predicted gene.~Similar to Arabidopsis thaliana DNA
chromosome 4, BAC clone F16G20, picA protein. (AL031326)
[Oryza sativa (japonica cultivar-group)]
Length = 477
Score = 37.0 bits (84), Expect = 0.10
Identities = 14/23 (60%), Positives = 19/23 (81%)
Frame = -2
Query: 453 ACDFPAESLPIDMLELKQCAYSM 385
AC FP ++LPID L ++QCAYS+
Sbjct: 451 ACPFPTDTLPIDQLVMQQCAYSV 473
>ref|NP_191708.1| polygalacturonase, putative; protein id: At3g61490.1 [Arabidopsis
thaliana] gi|11357717|pir||T47941 hypothetical protein
F2A19.90 - Arabidopsis thaliana
gi|6850840|emb|CAB71079.1| putative protein [Arabidopsis
thaliana]
Length = 476
Score = 33.5 bits (75), Expect = 1.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 450 CDFPAESLPIDMLELKQCAYSM 385
CDFP + L ID +ELK C+Y M
Sbjct: 454 CDFPTDVLEIDNVELKTCSYQM 475
>ref|NP_326277.1| unknown; predicted coding region [Mycoplasma pulmonis]
gi|25393309|pir||F90567 hypothetical protein MYPU_4460
[imported] - Mycoplasma pulmonis (strain UAB CTIP)
gi|14089860|emb|CAC13619.1| unknown; predicted coding
region [Mycoplasma pulmonis]
Length = 274
Score = 31.6 bits (70), Expect = 4.3
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 270 VPNYFGILYSEINS*FVVQNTCNTSLLSEKIFRKSYFRNISETKF 136
+ NY I + E S F VQN T+ L+E F K+ + N+ +++F
Sbjct: 17 IKNYINIYFLESLSQFQVQNKIYTNKLNEVNFIKNIYSNVLKSRF 61
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,828,596
Number of Sequences: 1393205
Number of extensions: 7434898
Number of successful extensions: 13481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13478
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
