Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003642A_C01 KMC003642A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA76734.1| ethylene responsive element binding factor [Nico... 99 3e-26
ref|NP_188666.1| ethylene responsive element binding factor 7; p... 92 2e-20
ref|NP_175479.1| ethylene responsive element binding factor 3 (A... 94 1e-18
ref|ZP_00030585.1| hypothetical protein [Burkholderia fungorum] 44 0.002
ref|NP_649903.1| RNA-binding protein S1 CG16788-PA gi|21430218|g... 40 0.005
>dbj|BAA76734.1| ethylene responsive element binding factor [Nicotiana tabacum]
Length = 225
Score = 99.4 bits (246), Expect(2) = 3e-26
Identities = 54/79 (68%), Positives = 59/79 (74%), Gaps = 11/79 (13%)
Frame = -3
Query: 571 QRPTSSGMSSTVESFSGPRPVRPPAP---PVAAARRYPRSPPVVPEDCRSDCDSSSSVVD 401
QRPTSS MSSTVESFSGPRP PPAP A++R+Y RSPPVVP+DC SDCDSSSSVVD
Sbjct: 119 QRPTSSSMSSTVESFSGPRP--PPAPRQQTTASSRKYTRSPPVVPDDCHSDCDSSSSVVD 176
Query: 400 --------DGDGDNVASSS 368
D D DN+ASSS
Sbjct: 177 HGDCEKENDNDNDNIASSS 195
Score = 41.2 bits (95), Expect(2) = 3e-26
Identities = 21/29 (72%), Positives = 23/29 (78%), Gaps = 2/29 (6%)
Frame = -1
Query: 351 RQPLPFDLNAPPA-EDAG-DDLHCPALCL 271
R+PL FDLN PP +DAG DDLHC ALCL
Sbjct: 197 RKPLLFDLNLPPPMDDAGADDLHCTALCL 225
>ref|NP_188666.1| ethylene responsive element binding factor 7; protein id:
At3g20310.1, supported by cDNA: 124720., supported by
cDNA: gi_20334801, supported by cDNA: gi_8467961
[Arabidopsis thaliana] gi|8467962|dbj|BAA96653.1| ERF
transcription factor 7 [Arabidopsis thaliana]
gi|9294548|dbj|BAB02811.1| ethylene responsive element
binding factor-like protein [Arabidopsis thaliana]
gi|14335150|gb|AAK59855.1| AT3g20310/MQC12_6
[Arabidopsis thaliana] gi|20334802|gb|AAM16262.1|
AT3g20310/MQC12_6 [Arabidopsis thaliana]
gi|21537240|gb|AAM61581.1| ethylene responsive element
binding factor, putative [Arabidopsis thaliana]
Length = 244
Score = 91.7 bits (226), Expect(2) = 2e-20
Identities = 54/105 (51%), Positives = 63/105 (59%), Gaps = 11/105 (10%)
Frame = -3
Query: 631 HRFYPAAGAGAGAGNVFHDHQ-----RPTSSGMSSTVESFSGPRPVRPPAP------PVA 485
HR Y G GN Q RP SS MSSTV+S SGPRP+ A P+
Sbjct: 119 HRLY-------GGGNFQEQQQQQIISRPASSSMSSTVKSCSGPRPMEAAAASSSVAKPLH 171
Query: 484 AARRYPRSPPVVPEDCRSDCDSSSSVVDDGDGDNVASSSLLADSP 350
A +RYPR+PPV PEDC SDCDSSSSV+D DGD++ASSS +P
Sbjct: 172 AIKRYPRTPPVAPEDCHSDCDSSSSVID--DGDDIASSSSRRKTP 214
Score = 28.9 bits (63), Expect(2) = 2e-20
Identities = 15/34 (44%), Positives = 17/34 (49%), Gaps = 6/34 (17%)
Frame = -1
Query: 354 RRQPLPFDLNAPPAEDAG------DDLHCPALCL 271
R+ P FDLN PP + DDLHC L L
Sbjct: 211 RKTPFQFDLNFPPLDGVDLFAGGIDDLHCTDLRL 244
>ref|NP_175479.1| ethylene responsive element binding factor 3 (AtERF3); protein id:
At1g50640.1, supported by cDNA: gi_3434970 [Arabidopsis
thaliana] gi|7531109|sp|O80339|ERF3_ARATH Ethylene
responsive element binding factor 3 (AtERF3)
gi|25453551|pir||T52011 ethylene responsive element
binding factor 3 [imported] - Arabidopsis thaliana
gi|3434971|dbj|BAA32420.1| ethylene responsive element
binding factor 3 [Arabidopsis thaliana]
gi|9454548|gb|AAF87871.1|AC012561_4 ethylene responsive
element binding factor 3 [Arabidopsis thaliana]
gi|12322345|gb|AAG51201.1|AC079279_22 ethylene
responsive element binding factor 3 (ERF3) [Arabidopsis
thaliana]
Length = 225
Score = 94.0 bits (232), Expect = 1e-18
Identities = 52/86 (60%), Positives = 59/86 (68%), Gaps = 7/86 (8%)
Frame = -3
Query: 586 VFHDHQ-------RPTSSGMSSTVESFSGPRPVRPPAPPVAAARRYPRSPPVVPEDCRSD 428
+F DHQ RPTSS MSSTVESFSGPRP A +RYPR+PPVVPEDC SD
Sbjct: 116 LFTDHQQQFPIVNRPTSSSMSSTVESFSGPRPTTMKP---ATTKRYPRTPPVVPEDCHSD 172
Query: 427 CDSSSSVVDDGDGDNVASSSLLADSP 350
CDSSSSV+D D D++ASSS + P
Sbjct: 173 CDSSSSVID--DDDDIASSSRRRNPP 196
Score = 32.3 bits (72), Expect = 5.3
Identities = 24/82 (29%), Positives = 33/82 (39%), Gaps = 17/82 (20%)
Frame = -1
Query: 465 GPRPLFLKTAAATAIPRHRWL------------TTAMETTSLLHPCSPIRRQPLPFDLNA 322
GPRP +K A PR + ++ ++ + S R P FDLN
Sbjct: 144 GPRPTTMKPATTKRYPRTPPVVPEDCHSDCDSSSSVIDDDDDIASSSRRRNPPFQFDLNF 203
Query: 321 PPAE-----DAGDDLHCPALCL 271
PP + + DDLHC L L
Sbjct: 204 PPLDCVDLFNGADDLHCTDLRL 225
>ref|ZP_00030585.1| hypothetical protein [Burkholderia fungorum]
Length = 713
Score = 43.5 bits (101), Expect = 0.002
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = -3
Query: 607 AGAGAGNVFHDHQRPTSSGMSSTVESFSGP---RPVRPPAPPVAAARRYPRSPPVVPE 443
A AGA + +SS +SS+ ++ S P +P PPA PVAAA P +PP VP+
Sbjct: 430 AEAGASQSLAEQAASSSSSLSSSGDAVSAPVAAQPATPPASPVAAASAMPPAPPPVPK 487
>ref|NP_649903.1| RNA-binding protein S1 CG16788-PA gi|21430218|gb|AAM50787.1|
LD23870p [Drosophila melanogaster]
gi|22859164|emb|CAD30680.1| RNA-binding protein S1
[Drosophila melanogaster] gi|23170813|gb|AAF54396.2|
CG16788-PA [Drosophila melanogaster]
Length = 374
Score = 40.0 bits (92), Expect(2) = 0.005
Identities = 31/107 (28%), Positives = 48/107 (43%), Gaps = 7/107 (6%)
Frame = +3
Query: 168 EREKRKKKKIKVAQIEKEKIS*FLPRTNTSSSSIRDRER-------GSADHHQHPPPAAR 326
E EK K K KVA+ + K TS SS RDRER S+D ++
Sbjct: 10 EGEKEKDNKEKVAKEKDGKA--------TSGSSRRDRERKRRGSASSSSDSRSSTSDSSS 61
Query: 327 *DQTAAAGGESASKDEEATLSPSPSSTTDDEESQSLRQSSGTTGGDR 467
++ + S+S +++ S S SS+ D ++ R+ G G D+
Sbjct: 62 SRSSSGSSRSSSSSSSDSSSSSSSSSSDSDRSEKNRRRGGGAAGKDK 108
Score = 21.6 bits (44), Expect(2) = 0.005
Identities = 13/34 (38%), Positives = 16/34 (46%)
Frame = +2
Query: 446 RNNGRGPRVPPGGCNRRSRRSDRAGTAEGLDGAA 547
R + + P +RRSR DRA A D AA
Sbjct: 134 RPGSKARKEPERDRDRRSRSRDRARRAGSNDRAA 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 582,897,756
Number of Sequences: 1393205
Number of extensions: 14520883
Number of successful extensions: 111796
Number of sequences better than 10.0: 390
Number of HSP's better than 10.0 without gapping: 76851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106749
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
