Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003627A_C01 KMC003627A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171616.1| chloroplast RNA-binding protein cp33, putative;... 76 2e-13
gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana] 59 4e-08
ref|NP_683045.1| RNA-binding protein [Thermosynechococcus elonga... 54 2e-06
ref|NP_712101.1| RNA-binding protein [Leptospira interrogans ser... 53 3e-06
ref|ZP_00073633.1| hypothetical protein [Trichodesmium erythraeu... 52 4e-06
>ref|NP_171616.1| chloroplast RNA-binding protein cp33, putative; protein id:
At1g01080.1, supported by cDNA: 21739., supported by
cDNA: gi_16930400 [Arabidopsis thaliana]
gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7
[Arabidopsis thaliana] gi|21554268|gb|AAM63343.1|
ribonucleoprotein, putative [Arabidopsis thaliana]
gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7
[Arabidopsis thaliana]
Length = 293
Score = 76.3 bits (186), Expect = 2e-13
Identities = 32/66 (48%), Positives = 50/66 (75%)
Frame = -1
Query: 527 PEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVV 348
P+ +R F++FG + S R+L D K GR R +AF+S+ S ERDAA+S NGT++ GR+I+V
Sbjct: 225 PDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIV 284
Query: 347 RQGVDR 330
R+G+++
Sbjct: 285 REGIEK 290
Score = 33.9 bits (76), Expect = 1.3
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -1
Query: 509 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVVRQGVD 333
+F FG V SV + ++ + G R +++ S A+ SL+GTE GR++ VR VD
Sbjct: 127 MFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVD 186
>gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]
Length = 679
Score = 58.9 bits (141), Expect = 4e-08
Identities = 26/51 (50%), Positives = 36/51 (69%)
Frame = -1
Query: 527 PEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGT 375
P+ +R F++FG + S R+L D K GR R +AF+S+ S ERDAA+S NGT
Sbjct: 591 PDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGT 641
>ref|NP_683045.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22295982|dbj|BAC09807.1| RNA-binding protein
[Thermosynechococcus elongatus BP-1]
Length = 94
Score = 53.5 bits (127), Expect = 2e-06
Identities = 28/76 (36%), Positives = 48/76 (62%), Gaps = 1/76 (1%)
Frame = -1
Query: 536 SATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGR 360
+AT ED+ +FA +G+V V L D + GR+R + F+ S+ E +AA++ L+G E+ GR
Sbjct: 11 TATQEDLEAVFAEYGSVKQVYLPVDRETGRKRGFGFVEMSSDAEEEAAIADLDGAEWMGR 70
Query: 359 KIVVRQGVDRES*DGA 312
++ V + RE+ G+
Sbjct: 71 QLKVNKARPREAMGGS 86
>ref|NP_712101.1| RNA-binding protein [Leptospira interrogans serovar lai str. 56601]
gi|24195595|gb|AAN49119.1|AE011365_5 RNA-binding protein
[Leptospira interrogans serovar lai str. 56601]
Length = 91
Score = 52.8 bits (125), Expect = 3e-06
Identities = 27/70 (38%), Positives = 43/70 (60%), Gaps = 1/70 (1%)
Frame = -1
Query: 533 ATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRK 357
AT +D+R F FG V SVR++ D G+ R AF+ ++ E +AA+ LNGT+ GR+
Sbjct: 12 ATEDDLRKAFESFGEVTSVRIITDKLSGKSRGLAFVEMANKEEGNAAIDGLNGTQIRGRE 71
Query: 356 IVVRQGVDRE 327
I V + + ++
Sbjct: 72 IKVNEALPKK 81
>ref|ZP_00073633.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 89
Score = 52.4 bits (124), Expect = 4e-06
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = -1
Query: 533 ATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRK 357
AT ED++ FA++GNV V++ D + GR R +AF+ SE E AA+ L+G+E GR
Sbjct: 12 ATDEDLKTAFAKYGNVKRVQVPNDRETGRPRGFAFVEMESEDEETAAIEGLDGSELMGRI 71
Query: 356 IVVRQGVDRE 327
+ V + RE
Sbjct: 72 LKVNKARPRE 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,829,774
Number of Sequences: 1393205
Number of extensions: 7791359
Number of successful extensions: 18415
Number of sequences better than 10.0: 694
Number of HSP's better than 10.0 without gapping: 17911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18404
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
