Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003621A_C01 KMC003621A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171720.1| hypothetical protein; protein id: At1g02180.1 [... 51 1e-05
dbj|BAC42294.1| unknown protein [Arabidopsis thaliana] 51 1e-05
ref|NP_068650.1| NADH dehydrogenase subunit 4 [Triatoma dimidiat... 32 5.1
dbj|BAB15254.1| unnamed protein product [Homo sapiens] 32 5.1
sp|P35811|XYNC_FIBSU Endo-1,4-beta-xylanase C precursor (Xylanas... 31 8.7
>ref|NP_171720.1| hypothetical protein; protein id: At1g02180.1 [Arabidopsis
thaliana]
Length = 202
Score = 50.8 bits (120), Expect = 1e-05
Identities = 25/65 (38%), Positives = 39/65 (59%), Gaps = 1/65 (1%)
Frame = -2
Query: 547 SLEILHSQNHTQVGAAVTGTDGGSPYFWCVLFSGGKPNSTFAFE-GGVAKLTKPGCFSGA 371
+L +L +++HT+VG + G+ +FWC+LFS G NS+F E G + GC+SG+
Sbjct: 108 ALSVLRNRSHTEVGVGMARLHKGT-FFWCLLFSDGVKNSSFVLEDNGRGIKQRTGCYSGS 166
Query: 370 NDECS 356
CS
Sbjct: 167 AFPCS 171
>dbj|BAC42294.1| unknown protein [Arabidopsis thaliana]
Length = 226
Score = 50.8 bits (120), Expect = 1e-05
Identities = 25/65 (38%), Positives = 39/65 (59%), Gaps = 1/65 (1%)
Frame = -2
Query: 547 SLEILHSQNHTQVGAAVTGTDGGSPYFWCVLFSGGKPNSTFAFE-GGVAKLTKPGCFSGA 371
+L +L +++HT+VG + G+ +FWC+LFS G NS+F E G + GC+SG+
Sbjct: 132 ALSVLRNRSHTEVGVGMARLHKGT-FFWCLLFSDGVKNSSFVLEDNGRGIKQRTGCYSGS 190
Query: 370 NDECS 356
CS
Sbjct: 191 AFPCS 195
>ref|NP_068650.1| NADH dehydrogenase subunit 4 [Triatoma dimidiata]
gi|11139108|gb|AAG31615.1|AF301594_8 NADH dehydrogenase
subunit 4 [Triatoma dimidiata]
Length = 443
Score = 32.0 bits (71), Expect = 5.1
Identities = 26/93 (27%), Positives = 44/93 (46%), Gaps = 12/93 (12%)
Frame = -3
Query: 285 LLFLCDHKLYGFPLHLGAFIAIVVMTGLASAILYFPPSSLLLDFIC*EIHARCLLLLVY- 109
L+ + + +Y F + G FIA+ V L +L F S+L L ++ E L L++
Sbjct: 70 LMVVASYSVYKFSNYSGEFIAVNVFL-LVFLVLSFSTSNLFLFYLFFESSLIPTLFLIFG 128
Query: 108 -----------LRILWYRLFSNLLLELSAFWIS 43
+L+Y LF++L L L F+I+
Sbjct: 129 WGYQPERLSAGFYLLFYTLFASLPLLLGIFYIA 161
>dbj|BAB15254.1| unnamed protein product [Homo sapiens]
Length = 616
Score = 32.0 bits (71), Expect = 5.1
Identities = 17/52 (32%), Positives = 21/52 (39%)
Frame = +3
Query: 354 PLHSSLAPLKQPGFVSLATPPSKAKVLLGLPPLNSTHQK*GDPPSVPVTAAP 509
P+ + +P P ATPPS+A L PPL PP P P
Sbjct: 164 PVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPP 215
Score = 31.6 bits (70), Expect = 6.7
Identities = 17/43 (39%), Positives = 20/43 (45%)
Frame = +3
Query: 369 LAPLKQPGFVSLATPPSKAKVLLGLPPLNSTHQK*GDPPSVPV 497
L L P LATPP +A L LPPL + PP P+
Sbjct: 95 LQGLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPL 137
>sp|P35811|XYNC_FIBSU Endo-1,4-beta-xylanase C precursor (Xylanase C) (1,4-beta-D-xylan
xylanohydrolase C) gi|1084154|pir||B53295 xylanase (EC
3.2.1.-) precursor - Fibrobacter succinogenes
gi|402871|gb|AAA21848.1| endo-1,4-beta-xylanase
precursor
Length = 608
Score = 31.2 bits (69), Expect = 8.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -2
Query: 514 QVGAAVTGTDGGSPYFWCVLFSGGKPNSTFAFEGGVAKLTKPGCFSGAND 365
Q ++VTG G SPY + + + GG + TF ++ G K + ++G ND
Sbjct: 314 QNNSSVTGNVGSSPYHYEIWYQGGNNSMTF-YDNGTYKAS----WNGTND 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,700,205
Number of Sequences: 1393205
Number of extensions: 10578725
Number of successful extensions: 25399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25378
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
