Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003620A_C01 KMC003620A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B86442 probable 30S ribosomal protein S11 [imported] - Arab... 149 3e-35
ref|NP_564385.1| 30S ribosomal protein S11, putative; protein id... 149 3e-35
pir||T03690 probable ribosomal protein S11, mitochondrial - rice... 117 1e-25
dbj|BAB93272.1| putative ribosomal protein S11 [Oryza sativa (ja... 113 2e-24
ref|NP_054427.1| rps11 [Marchantia polymorpha] gi|417734|sp|P268... 52 6e-06
>pir||B86442 probable 30S ribosomal protein S11 [imported] - Arabidopsis
thaliana gi|12321311|gb|AAG50732.1|AC079041_25 30S
ribosomal protein S11, putative [Arabidopsis thaliana]
Length = 235
Score = 149 bits (376), Expect = 3e-35
Identities = 63/102 (61%), Positives = 92/102 (89%)
Frame = -2
Query: 599 KGNIKLSGSAGSLKDMKSGQKLSRYAAEATAEVVGRRARGLGLKSVVMKVNGYTHFRRKR 420
KGN+K ++GSL D+K G+K++ Y A+ATAE +GRRA+ +GLKSVV+KVNG+THF +K+
Sbjct: 134 KGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGKKK 193
Query: 419 QAILSWREGFTDSKADKNPIVFVEDTTRRAHNGCRLPKKRRI 294
+AI+++R+GFT+S++D+NPIV++EDTTR+AHNGCRLP+KRR+
Sbjct: 194 KAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 235
>ref|NP_564385.1| 30S ribosomal protein S11, putative; protein id: At1g31817.1,
supported by cDNA: 36981., supported by cDNA:
gi_17380741 [Arabidopsis thaliana]
gi|17380742|gb|AAL36201.1| putative 30S ribosomal
protein S11 [Arabidopsis thaliana]
gi|21436389|gb|AAM51364.1| putative 30S ribosomal
protein S11 [Arabidopsis thaliana]
Length = 314
Score = 149 bits (376), Expect = 3e-35
Identities = 63/102 (61%), Positives = 92/102 (89%)
Frame = -2
Query: 599 KGNIKLSGSAGSLKDMKSGQKLSRYAAEATAEVVGRRARGLGLKSVVMKVNGYTHFRRKR 420
KGN+K ++GSL D+K G+K++ Y A+ATAE +GRRA+ +GLKSVV+KVNG+THF +K+
Sbjct: 213 KGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGKKK 272
Query: 419 QAILSWREGFTDSKADKNPIVFVEDTTRRAHNGCRLPKKRRI 294
+AI+++R+GFT+S++D+NPIV++EDTTR+AHNGCRLP+KRR+
Sbjct: 273 KAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314
>pir||T03690 probable ribosomal protein S11, mitochondrial - rice
gi|1841357|dbj|BAA12798.1| mitochondrial ribosomal
protein S11 (nuclear encoded) [Oryza sativa (japonica
cultivar-group)]
Length = 254
Score = 117 bits (293), Expect = 1e-25
Identities = 58/103 (56%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Frame = -2
Query: 599 KGNIKLSGSAGSLKDMKSGQKLSRYAAEATAEVVGRRARGLGLKSVVMKVNGYTHFRRKR 420
+GN K SAG L+D K +LS+YAAEATAE VGR AR +GLKSVVMKV G T F +K+
Sbjct: 152 RGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMGLKSVVMKVKGTTFFNKKK 211
Query: 419 QAILSWREGFTDSKA-DKNPIVFVEDTTRRAHNGCRLPKKRRI 294
+ ILS+REGF + +++P+V + D T+ HNGCRLPK+RR+
Sbjct: 212 KVILSFREGFRGERVREQSPVVLIHDVTQLPHNGCRLPKQRRV 254
>dbj|BAB93272.1| putative ribosomal protein S11 [Oryza sativa (japonica
cultivar-group)]
Length = 257
Score = 113 bits (283), Expect = 2e-24
Identities = 56/103 (54%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Frame = -2
Query: 599 KGNIKLSGSAGSLKDMKSGQKLSRYAAEATAEVVGRRARGLGLKSVVMKVNGYTHFRRKR 420
+GN K SAG L+D K +LS+YA EATAE VGR AR +GLKSVVMKV G F +K+
Sbjct: 155 RGNRKTGASAGCLEDKKGRSRLSKYATEATAEHVGRAARKMGLKSVVMKVKGTVFFNKKK 214
Query: 419 QAILSWREGFTDSKA-DKNPIVFVEDTTRRAHNGCRLPKKRRI 294
+ ILS+REGF + +++P+VF+ D T+ HNGCRLPK+R +
Sbjct: 215 KVILSFREGFRGERVREQSPVVFIHDVTQLPHNGCRLPKQRLV 257
>ref|NP_054427.1| rps11 [Marchantia polymorpha] gi|417734|sp|P26870|RT11_MARPO
MITOCHONDRIAL RIBOSOMAL PROTEIN S11
gi|541552|pir||S41139 ribosomal protein S11,
mitochondrial - liverwort (Marchantia polymorpha)
mitochondrion gi|250826|gb|AAB22418.1| ribosomal protein
S11 [Marchantia polymorpha=liverwort, Peptide
Mitochondrial, 125 aa] gi|786211|gb|AAC09424.1| rps11
[Marchantia polymorpha]
Length = 125
Score = 52.0 bits (123), Expect = 6e-06
Identities = 36/101 (35%), Positives = 49/101 (47%)
Frame = -2
Query: 596 GNIKLSGSAGSLKDMKSGQKLSRYAAEATAEVVGRRARGLGLKSVVMKVNGYTHFRRKRQ 417
GN K S+GS+ K ++ + YAA+ATAE R A LG K V +++ G + +
Sbjct: 35 GNTKTWSSSGSV-GFKGSRRSTNYAAQATAENAARVAIQLGFKFVEVRIKGLGYGKESSL 93
Query: 416 AILSWREGFTDSKADKNPIVFVEDTTRRAHNGCRLPKKRRI 294
L K I + D T HNGCR PKKRR+
Sbjct: 94 RGL---------KLGGLIITKIRDVTPTPHNGCRPPKKRRV 125
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,278,763
Number of Sequences: 1393205
Number of extensions: 10028842
Number of successful extensions: 24424
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 23813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24388
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
