Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003616A_C03 KMC003616A_c03
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_224949.1| similar to potassium large conductance pH-sensi... 35 0.89
gb|EAA03544.1| ebiP4089 [Anopheles gambiae str. PEST] 33 2.0
dbj|BAC30709.1| unnamed protein product [Mus musculus] 33 3.4
ref|NP_765176.1| conserved hypothetical protein [Staphylococcus ... 32 4.4
gb|EAA33235.1| hypothetical protein [Neurospora crassa] 32 7.5
>ref|XP_224949.1| similar to potassium large conductance pH-sensitive channel,
subfamily M, alpha member 3 [Mus musculus] [Rattus
norvegicus]
Length = 274
Score = 34.7 bits (78), Expect = 0.89
Identities = 18/44 (40%), Positives = 19/44 (42%)
Frame = +3
Query: 168 PCP*T*FHVNNNGTEGKHMRKLGGCKHLHSLTNNNLSYCLFFTF 299
PC H + GTEGK R GG LHS L CL F
Sbjct: 161 PCVDIGEHTGHTGTEGKRERTTGGLTQLHSELGEFLEGCLILNF 204
>gb|EAA03544.1| ebiP4089 [Anopheles gambiae str. PEST]
Length = 197
Score = 33.5 bits (75), Expect = 2.0
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +3
Query: 192 VNNNGTEGKHMRKLGGCKHLHSLTNNNLSYCLFFTFTFFLVDLSQFALSVM 344
+ +GT+ +H +++ + +L + L YC+FF + F V L + + ++
Sbjct: 10 LGTDGTDFEHRQRVAAHYQISALNKSRLKYCIFFHYLLFFVMLVKLSADIL 60
>dbj|BAC30709.1| unnamed protein product [Mus musculus]
Length = 135
Score = 32.7 bits (73), Expect = 3.4
Identities = 20/78 (25%), Positives = 33/78 (41%)
Frame = -2
Query: 567 CTFLNCEIICSFTEKRMLPHKLDISH*FLKLFVHSRICFICSQICLHELFKPYFYHGLHY 388
C C +C F ++P K +S F+ LF R+ L+ P G H+
Sbjct: 57 CVPQECVCVCVFLRSCLIPRKFFLSFFFIFLFFQDRV----------SLYSP-DCPGTHF 105
Query: 387 AEDKGFDSKSSPSSASLI 334
+ G ++ P+SAS +
Sbjct: 106 VDQAGLKLRNLPASASRV 123
>ref|NP_765176.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228] gi|27316086|gb|AAO05220.1|AE016749_166 conserved
hypothetical protein [Staphylococcus epidermidis ATCC
12228]
Length = 243
Score = 32.3 bits (72), Expect = 4.4
Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 11/60 (18%)
Frame = -3
Query: 509 INLTSPTDFLNYLFILGFVLFVLKYV-----------FMSCLSLTSTMGYIMRKTKGLIL 363
+N+ + N+LF+ +LF++K + FMS +TS MGYI+ KT ++L
Sbjct: 47 VNIDMVFNLANWLFLFAGLLFIIKTITRDYSQGTIQLFMS--RITSRMGYIITKTVSIVL 104
>gb|EAA33235.1| hypothetical protein [Neurospora crassa]
Length = 1716
Score = 31.6 bits (70), Expect = 7.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 112 ISEYRTHQNSQQWWQSIPIHAPKPNFMSIIMALKESTCGSLEAASIFI 255
++E T +N QW Q IPI PNF + + C L S+ I
Sbjct: 1229 VTEKLTTENESQWLQGIPIEKLSPNFRDAMTITRRLGCRYLWIDSLCI 1276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,789,008
Number of Sequences: 1393205
Number of extensions: 10569072
Number of successful extensions: 24719
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24714
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
