Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003612A_C01 KMC003612A_c01
(422 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178451.1| putative integral membrane protein; protein id:... 92 1e-18
ref|NP_565303.1| expressed protein; protein id: At2g03590.1, sup... 91 3e-18
ref|NP_178450.1| putative integral membrane protein; protein id:... 91 4e-18
pir||B86391 hypothetical protein T1K7.19 [imported] - Arabidopsi... 80 5e-15
gb|AAL24174.1| At1g26440/T1K7_17 [Arabidopsis thaliana] gi|27764... 80 5e-15
>ref|NP_178451.1| putative integral membrane protein; protein id: At2g03530.1
[Arabidopsis thaliana] gi|25361098|pir||E84449 probable
integral membrane protein [imported] - Arabidopsis
thaliana gi|4335747|gb|AAD17424.1| putative integral
membrane protein [Arabidopsis thaliana]
Length = 385
Score = 92.0 bits (227), Expect = 1e-18
Identities = 44/57 (77%), Positives = 51/57 (89%)
Frame = -3
Query: 420 AAADAVQAFPIVTTFWGIVLFGEYRKSSRRTYILLGSMLFMFIMAVVVLMASSGQRK 250
AAAD+VQA P+V+TFWG+VLFGEYR+SSR+TY+LL MLFMFI AV VLMASSG RK
Sbjct: 329 AAADSVQALPLVSTFWGVVLFGEYRRSSRKTYLLLFCMLFMFISAVAVLMASSGHRK 385
>ref|NP_565303.1| expressed protein; protein id: At2g03590.1, supported by cDNA:
2021. [Arabidopsis thaliana] gi|25361100|pir||C84450
hypothetical protein At2g03590 [imported] - Arabidopsis
thaliana gi|4406756|gb|AAD20067.1| expressed protein
[Arabidopsis thaliana] gi|21554091|gb|AAM63172.1|
putative integral membrane protein [Arabidopsis
thaliana]
Length = 390
Score = 91.3 bits (225), Expect = 3e-18
Identities = 45/57 (78%), Positives = 51/57 (88%)
Frame = -3
Query: 420 AAADAVQAFPIVTTFWGIVLFGEYRKSSRRTYILLGSMLFMFIMAVVVLMASSGQRK 250
AAADAVQA P+V+TFWGI+LFGEYR+SSR+TY LL SML MFI+AV VLMASSG RK
Sbjct: 334 AAADAVQALPLVSTFWGILLFGEYRRSSRKTYTLLISMLLMFIVAVAVLMASSGHRK 390
>ref|NP_178450.1| putative integral membrane protein; protein id: At2g03520.1
[Arabidopsis thaliana] gi|25361101|pir||D84449 probable
integral membrane protein [imported] - Arabidopsis
thaliana gi|4335748|gb|AAD17425.1| putative integral
membrane protein [Arabidopsis thaliana]
Length = 388
Score = 90.5 bits (223), Expect = 4e-18
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = -3
Query: 420 AAADAVQAFPIVTTFWGIVLFGEYRKSSRRTYILLGSMLFMFIMAVVVLMASSGQRK 250
AAAD+VQA P+V+TFWGIVLFGEYRKSS+RTY LL SML MF+ AV +LMASSG RK
Sbjct: 332 AAADSVQALPLVSTFWGIVLFGEYRKSSKRTYALLVSMLAMFVAAVAILMASSGHRK 388
>pir||B86391 hypothetical protein T1K7.19 [imported] - Arabidopsis thaliana
gi|9797765|gb|AAF98583.1|AC013427_26 Contains similarity
to an A3 protein with unknown function gi|2498098 from
Vigna unguiculata gb|X90487. ESTs gb|AA657316,
gb|Z17655, gb|T04622 come from this gene. [Arabidopsis
thaliana]
Length = 412
Score = 80.5 bits (197), Expect = 5e-15
Identities = 39/57 (68%), Positives = 48/57 (83%)
Frame = -3
Query: 420 AAADAVQAFPIVTTFWGIVLFGEYRKSSRRTYILLGSMLFMFIMAVVVLMASSGQRK 250
AA+DAVQA P+V+TFWGI LFGEYR+SS RTY LL ML MF +AV +LMAS+G+R+
Sbjct: 352 AASDAVQALPLVSTFWGIYLFGEYRRSSTRTYALLVGMLVMFTVAVGLLMASAGERE 408
>gb|AAL24174.1| At1g26440/T1K7_17 [Arabidopsis thaliana] gi|27764920|gb|AAO23581.1|
At1g26440/T1K7_17 [Arabidopsis thaliana]
Length = 413
Score = 80.5 bits (197), Expect = 5e-15
Identities = 39/57 (68%), Positives = 48/57 (83%)
Frame = -3
Query: 420 AAADAVQAFPIVTTFWGIVLFGEYRKSSRRTYILLGSMLFMFIMAVVVLMASSGQRK 250
AA+DAVQA P+V+TFWGI LFGEYR+SS RTY LL ML MF +AV +LMAS+G+R+
Sbjct: 353 AASDAVQALPLVSTFWGIYLFGEYRRSSTRTYALLVGMLVMFTVAVGLLMASAGERE 409
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,599,718
Number of Sequences: 1393205
Number of extensions: 7370328
Number of successful extensions: 18296
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18265
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
